| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_4456 |
|---|
| Symbol | |
|---|
| ID | 8532899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 4884213 |
|---|
| End bp | 4885850 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_003261755 |
|---|
| Protein GI | 261823649 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCAACTT TTTTGCATCT TCATCAGAAA CTCGCTATTT TTTCCTCATT GCTCCTTCTG
GGCGGTGCAT TGAATGCACA AGCCGCGAAT GACGCACCAA AAATTGGCGG CACGCTGGTT
TATCTGGAAC AGCAGGCACA CACCAATCTC TATACGCCCG CGGGCGGTTT TTATCCGAAC
GGCGGTATTC TCAATCAAAT TACCGATAAA CTAACGTACC AGAACCCGGA AACGTTGGAG
ATCGAACCGT GGGTTGCAGA ATCCTGGACC ATCAACGCGG ATAACACGGA ATACACGTTC
AAGATCCGCC CCGGCATCAG CTTTTCTGAC GGCACCCCGC TGGACGCCAA CGCGGTAGCG
AAAAACATTG ATACCTACGG TTTAGGGAAT ACGGCGCTCA ACCTGCCGGT TTCTGAAGTC
ATTAACAACT ATCGACGTAG TGAAGTCATC GACCCGCTGA CAGTAAAATT TTACTTTAAG
AAGCCCTCAC CGGGGTTTTT ACAAGGCACT TCAGCCATCG GTTCCGGTTT GGTTTCTCTC
AGCACGCTTG AGCGTAATTT CAATCAATTA GGTAATGCCA AAAACGTTAT TGGCTCCGGT
CCATTCGTGG TCAGCAGCGA GAAGCTGGGG CGCGAACTGA AACTGACCGC CCGTAAGGAT
TACAACTGGG CTCCGGTTAA ATCGAAGCAT CAGGGGCGTG CCTATCTGGA CGGCATTACC
TATCTGGTCA CCCCAGAAGA CAGCGTGCGT ATCGGCGCGT TGGTCTCCGG TCAGGCGGAT
TTCATTCGTC AGATCCAAGC CTATGATGAA AAGCGGGTAC AAAGTCAGGG CTTCAATCTT
TATGCCCCGC CTACGCGCGG CGTCAATAAC AGCGTGGTTT TCCGTCCAGA TAACCCGCTG
GTAGCGGATA TCCGCGTGCG TAAGGCACTG CTGCACGCCA CCAACACCAA AGAGATCATT
GATACGCTGT TCTCAGACAA CTACCCGCAG GCCACGTCAC CGCTGGCTAA AACCGCCGCG
GGCTATGTCG ACCTTTCCAG CAAGCTGACC TTCGATCTCG CTCAGGCCAA CAAACTGCTA
GATGACGCAG GGTGGAAAAC CGGTCCCCAA AAATTACGCC AGAAAGACGG CAAAACGCTG
GAACTGACCG CCTATGAATC TCTGCCGCAG CCGCAGAACA AAGAAACCTT ACAGTTGGTT
TCGCAACAGT GGGCAAAAGT CGGCGTGAAG CTGAATGTGT TAGCGGGCGA CGCGGGCAGT
AAAATCGTGG ATAGCCTCGA TCCGCTGAAA ACCGGGGTGG CACCCGCGAT GGTCGGCCGC
GCTGACCCGG ATGTGCTGAA AAGCCAGTAT TACCCCACAG TGCGTAACGT CTTGCTGCAA
AAAGGTGGCT CCAGCGACAA GGTGAAGGAC TTTGTCGACC CGCATCTGAA TACGCTGCTG
GATGGTATCG CCGCTGAAAC CGACCGCAGC AAGCGGCTGG CGCTGGTAGG AGAGGTGCAG
AGCTACCTGA TCGATCAGGC TTACGTCATT CCCATCTTTG AAGAACCACA GGTATTTGCG
GGTGCCTCCA CCACAAAAGG CATCGCGTTT GAAGCCGTTG GTCGCCCCAG TTTTTACAAC
ACCTGGCTGG ATAAGTAA
|
|---|
| Protein sequence | MATFLHLHQK LAIFSSLLLL GGALNAQAAN DAPKIGGTLV YLEQQAHTNL YTPAGGFYPN
GGILNQITDK LTYQNPETLE IEPWVAESWT INADNTEYTF KIRPGISFSD GTPLDANAVA
KNIDTYGLGN TALNLPVSEV INNYRRSEVI DPLTVKFYFK KPSPGFLQGT SAIGSGLVSL
STLERNFNQL GNAKNVIGSG PFVVSSEKLG RELKLTARKD YNWAPVKSKH QGRAYLDGIT
YLVTPEDSVR IGALVSGQAD FIRQIQAYDE KRVQSQGFNL YAPPTRGVNN SVVFRPDNPL
VADIRVRKAL LHATNTKEII DTLFSDNYPQ ATSPLAKTAA GYVDLSSKLT FDLAQANKLL
DDAGWKTGPQ KLRQKDGKTL ELTAYESLPQ PQNKETLQLV SQQWAKVGVK LNVLAGDAGS
KIVDSLDPLK TGVAPAMVGR ADPDVLKSQY YPTVRNVLLQ KGGSSDKVKD FVDPHLNTLL
DGIAAETDRS KRLALVGEVQ SYLIDQAYVI PIFEEPQVFA GASTTKGIAF EAVGRPSFYN
TWLDK
|
|---|
| |