| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_4404 |
|---|
| Symbol | |
|---|
| ID | 8532847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 4827073 |
|---|
| End bp | 4827981 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_003261703 |
|---|
| Protein GI | 261823597 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGATTAC GCCATATTGA AATCTTCCAG GCCATTGTTC AGGCAGGCAC CATCAGTGGC
GCAGCCCGTT TGCTCAACGT CTCGCAGCCC AATGTCAGCC GGGTATTGAA CCATGCGGAA
CAACAGCTTG GGTTTTCTCT GTTTGAGCGG CGCACACAAG GGATGATCGC CACCGAAGAG
GGGCTGCGGC TAATCCCGAA AGTGCAGGAG CTTTTCAGCC ACCTACAAAG CATCAGTTCA
CTCACCGAAC AAATCAAAAC CAGCAAAGCA CACTCCGTGC GGCTGGGCGC GGCACACGCG
TTCGGGCAAA TGATCGTCGC ACCGACGCTA GTCGAGTTTC ATAAGCAGGC AGCATCGGTT
AACGTCGAGC TGGTGACCGA ACATTTCAGC ACGCTGTGCC AAAACATCCT GCAAAACCAG
CTCGATTTCG CACTAATCTT TGGCCAACAG GTGCCGTCCG AGCTGCTGGC AGAACCGCTA
TTCCAATCCA CAATGGTCGC CCTGTTACCG AAAAACAGCC CGGTGAACGG CCCGGTATCG
CTGGAATGGT TGTGCAACAA CAACCTGCTA ATGATGCAGC ATCAAGACCC GCTCGGTCAG
GTGGTACACC GTGCACTGCG CGACAAGGCG CTACAGCCGA CGGCTTCTCT CTACATCAAG
ACTTACTCAG TGATTGCCGA TATCGTACTG GCGGGTGGCG GCGCGGGCAT CGTCGATCTC
TTCACCGCTT GCCGCTATGC TGACCAACTT AAAATCGTCC CCATCGACCA GCCTCTGCCC
TTTGAAGTCA CGCTGATCAG CCGTCGCGAC AACCCGCAAT CGCAGGCAAC GCTACAGTTG
AAACAGATGA TGAAAAACCG CTGTCGCGAC ATCGCCAGAC AGCACGAGAC TCTGCTTTAC
GCCGTCTGA
|
|---|
| Protein sequence | MRLRHIEIFQ AIVQAGTISG AARLLNVSQP NVSRVLNHAE QQLGFSLFER RTQGMIATEE
GLRLIPKVQE LFSHLQSISS LTEQIKTSKA HSVRLGAAHA FGQMIVAPTL VEFHKQAASV
NVELVTEHFS TLCQNILQNQ LDFALIFGQQ VPSELLAEPL FQSTMVALLP KNSPVNGPVS
LEWLCNNNLL MMQHQDPLGQ VVHRALRDKA LQPTASLYIK TYSVIADIVL AGGGAGIVDL
FTACRYADQL KIVPIDQPLP FEVTLISRRD NPQSQATLQL KQMMKNRCRD IARQHETLLY
AV
|
|---|
| |