| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_4245 |
|---|
| Symbol | ubiB |
|---|
| ID | 8532688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 4688944 |
|---|
| End bp | 4690584 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | putative ubiquinone biosynthesis protein UbiB |
|---|
| Protein accession | YP_003261576 |
|---|
| Protein GI | 261823470 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.806176 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCCG GTGAATTACG CCGCCTCTAC AGCATTGTGC GTGTGTTGTT GAGCTATGGT
CTGGACGAAC TCATTCCTAA AATGCGTCTG ACGTTTCCAC TGCGTGCGGG TCGCCGCCTG
CTGTTTTGGT TACCTAACCG CCACCGCAAC ATGCCTTTAG GGGAACGTCT GCGTTTAGCG
CTTCAGGAGT TGGGGCCGGT GTGGATTAAG TTCGGGCAAA TGATGTCGAC GCGCCGCGAT
CTGTTTCCAC CTGCTATCGC CGATCAGTTA GCAATGTTGC AGGATAAGGT TGAGCCGTTT
GATGGCAAAC TGGCGCGTGA GCAGATTGAG CTGTCAATGG GGGGGATCCC TCTTGAAGAG
TGGTTTGACG ATTTTGATAT CAAACCATTG GCTTCAGCTT CGATTGCACA GGTTCATACC
GCCCGCCTGA AAAGTACGGG AAAAGAGATT GTTATCAAGG TGATCCGCCC GGATATTTTA
CCTGTCATCA AGGCAGATAT GCGCCTGATG AAACGTCTGG CTGGCTGGTT GCCTCGCTTG
TTACCGGATG GTCGCCGTCT GCGCCCGCGT GAAGTGGTGC TGGAATATGA AAAAACACTG
CTTGATGAGC TGAATTTGCT GCGAGAAGCG GCAAATGCCA TCCAACTGCG GCGTAATTTT
GAGAACAGCC CGATGCTGTA TGTGCCGGAA ATTTATTCGG ACTATTGCAG AGAAAGCATG
TTGGTCATGG AACGTATCTA CGGCATTCCT GTTTCTGATG TCGACGCGCT GCAAGCCAAT
GGAACGGATA TGAAATTGCT GGCAGAGCGC GGCGTTCAGG TGTTCTTCAC GCAGGTATTT
CGCGACAGTT TCTTCCATGC GGATATGCAT CCCGGCAATA TCTTTATCAG CTACGATCAC
CCCGAAGACC CGCAGTACAT CGGTATTGAT TGCGGTATCG TCGGTTCGTT GAATAAAGAA
GATAAGCGCT ATCTGGCTGA GAATTTCATC GCTTTTTTCA ACCGTGATTA TCGCAAAGTC
GCCGAACTGC ATGTAGATTC GGGCTGGGTG CCTGCAGATA CCAATGTTGC AGATTTTGAG
TTTGCTATTC GTACTGTCTG TGAGCCGATT TTCGAGAAGC CGTTGGCGGA AATTTCGTTC
GGTCATGTAT TGTTGAATTT GTTTAATACG GCGCGTCGCT TCAATATGGA AGTACAGCCT
CAGTTGGTAT TGCTGCAAAA AACGCTGCTA TATATTGAAG GTGTTGGTCG GCAGCTTTAT
CCGCAGCTCG ATCTGTGGAA AACCGCTAAG CCTTTTCTAG AGAGTTGGCT GAAGCAACAG
GTCGGTTTAC CTGCGGTTTT CCGGGCGCTA AAAGAAAAGG CACCGTTCTG GGCTGAGAAA
CTGCCGGAGC TTCCTGAGCT CTTTTATGAT GGGCTGCGTC AGCATAAGAT GTTAAAGCAA
AGCGTCGATA AGCTGGCACA TGAGTTGAAA ACGCAGCAGG CTCGCCAAGG GCAGTCACGA
TATCTTTTGG GTATTGGCGC AACCCTGCTA ATCAGTGGTA CGGTGTTACT GGTTGGTCGT
GTTGGAACCG ATATGGTTCC CGCAGGGTTG ATGGCAGCAG GAATTGTTGC CTGGTTTATC
GGTTGGCGTC GAACTCGTTG A
|
|---|
| Protein sequence | MTPGELRRLY SIVRVLLSYG LDELIPKMRL TFPLRAGRRL LFWLPNRHRN MPLGERLRLA
LQELGPVWIK FGQMMSTRRD LFPPAIADQL AMLQDKVEPF DGKLAREQIE LSMGGIPLEE
WFDDFDIKPL ASASIAQVHT ARLKSTGKEI VIKVIRPDIL PVIKADMRLM KRLAGWLPRL
LPDGRRLRPR EVVLEYEKTL LDELNLLREA ANAIQLRRNF ENSPMLYVPE IYSDYCRESM
LVMERIYGIP VSDVDALQAN GTDMKLLAER GVQVFFTQVF RDSFFHADMH PGNIFISYDH
PEDPQYIGID CGIVGSLNKE DKRYLAENFI AFFNRDYRKV AELHVDSGWV PADTNVADFE
FAIRTVCEPI FEKPLAEISF GHVLLNLFNT ARRFNMEVQP QLVLLQKTLL YIEGVGRQLY
PQLDLWKTAK PFLESWLKQQ VGLPAVFRAL KEKAPFWAEK LPELPELFYD GLRQHKMLKQ
SVDKLAHELK TQQARQGQSR YLLGIGATLL ISGTVLLVGR VGTDMVPAGL MAAGIVAWFI
GWRRTR
|
|---|
| |