| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_4154 |
|---|
| Symbol | |
|---|
| ID | 8532587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 4577648 |
|---|
| End bp | 4579474 |
|---|
| Gene Length | 1827 bp |
|---|
| Protein Length | 608 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_003261485 |
|---|
| Protein GI | 261823379 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00653276 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCTACGG CGGAAGTATT GAATAAGGAA GCGCTGGCGG TTCAGGTTCT ACGGGACACG
TTCGGCTACC AGCAATTCCG ACCGGGTCAG CAGGAAATTA TCAGCGCGAC GCTCAGTGGG
CAGGACTGTC TGGTCATTAT GCCGACAGGC GGCGGTAAAT CGCTATGCTA CCAGATCCCC
GCGCTGGTGA TGGACGGGCT GACGCTGGTG GTGTCTCCGC TGATTTCGCT GATGAAAGAT
CAGGTCGATC AGCTTCAAGC CTATGGTGTT TCGGCCGCTT GTCTCAATTC GACGCAGACG
CGCGAACAGC AGCTTGAGGT AATGGCTGGC TGTCGTACCG GGCAGATCAA ACTGCTTTAT
ATCGCGCCGG AACGTCTGAC AACGGACAGT TTCCTCGATC ATCTCGCCCA CTGGCAGATT
TCACTGATCG CGGTGGATGA AGCGCACTGC ATTTCCCAAT GGGGACACGA TTTCCGTCCT
GAATACCGGG CGCTGGGGCA GATTAAACAG CGTTTTCCCC ACCTTCCTTT TATTGCACTG
ACGGCCACCG CCGATGAGAC CACACGGAAC GATATTGTTC GCCTGTTGGA TCTTCAGTCC
CCGCTGATTC AGATCAGCAG TTTTGACCGC CCAAATATTC GCTACACGCT GGTGGAGAAA
TTCAAACCGC TCGACCAGCT CTGGATGTTC GTGCAGGGGC AGCGGGGGAA AAGTGGCATT
ATCTACTGTA ATAGCCGTTC CCGCGTGGAA GACATCAGCG CACGTTTGCA GGCTCGTGGG
CTGAGCGCAG GGGCGTATCA CGCCGGGTTG GACAATGAAC GGCGTGCTCA AGTGCAGGAA
GCGTTCCTGC GTGACGATCT TCAAGTGGTG GTCGCAACCG TCGCGTTTGG TATGGGTATC
AACAAGCCTA ACGTGCGGTT CGTGGTGCAT TTTGATATTC CGCGCAACAT CGAATCCTAC
TATCAGGAAA CGGGGCGTGC CGGGCGTGAT GGCCTCGCTG CCGAAGCTGC ACTGTTCTAC
GATCCGGCAG ATATGGCATG GCTGCGTCGC TGTCTGGAAG AGAAACCCGC CGGGCCGCAG
TTGGATATTG AACGTCATAA GCTCAATGCG ATGGGCGCGT TTGCCGAGGC GCAGACCTGC
CGTCGTCTGG TGTTACTGAA CTATTTCGGT GAGGGACGCC AAGAGGCCTG CGGAAACTGC
GATATTTGTC TCGATCCGCC GAAGCGTTAC GACGGGCTGG TTGAGGCGCA AAAGGCACTT
TCTTGCGTAT ACCGAGTCGG GCAGCGTTTT GGTCTGGGGT ATATCGTCGA GGTATTGCGC
GGTGCGAATA ACCAGCGTAT TCGTGATTTC GGTCATGACA AACTGCCGGT CTACGGTATT
GGTAAGGATA AATCGCAGGA GCATTGGGTC AGCGTGCTGC GCCAGTTGAT TCATCTGGGT
TTGCTGAACC AGAACATTAC GATGCACTCC GCCGTACAGC TTACCGAATC TGCGCGTCCG
GTATTGCGGG GAGAAATGCC GTTGCAACTG GCCGTGCCGC GTGTGATTAA CCTGAAACCC
CGTGCTAATC AAAAATCTTA CGGCGGAAAT TACGACCGTA AGCTGTTTGC CAAATTGCGC
AAACTGCGCA AGTCCATTGC GGACGAAGAC AATATTCCAC CTTACGTGGT GTTCAGCGAT
GCCACGCTGC TGGAGATGGC GGAAATGATG CCGATCACGG CGGGTGAGTT GCTGAATATC
AACGGGGTCG GCCACCGCAA ACTTGAACGA TTCGGTGCGC CTTTCATGAA CATGATCCGC
GATCATGTCG ATAATGATGA TGAGTGA
|
|---|
| Protein sequence | MSTAEVLNKE ALAVQVLRDT FGYQQFRPGQ QEIISATLSG QDCLVIMPTG GGKSLCYQIP
ALVMDGLTLV VSPLISLMKD QVDQLQAYGV SAACLNSTQT REQQLEVMAG CRTGQIKLLY
IAPERLTTDS FLDHLAHWQI SLIAVDEAHC ISQWGHDFRP EYRALGQIKQ RFPHLPFIAL
TATADETTRN DIVRLLDLQS PLIQISSFDR PNIRYTLVEK FKPLDQLWMF VQGQRGKSGI
IYCNSRSRVE DISARLQARG LSAGAYHAGL DNERRAQVQE AFLRDDLQVV VATVAFGMGI
NKPNVRFVVH FDIPRNIESY YQETGRAGRD GLAAEAALFY DPADMAWLRR CLEEKPAGPQ
LDIERHKLNA MGAFAEAQTC RRLVLLNYFG EGRQEACGNC DICLDPPKRY DGLVEAQKAL
SCVYRVGQRF GLGYIVEVLR GANNQRIRDF GHDKLPVYGI GKDKSQEHWV SVLRQLIHLG
LLNQNITMHS AVQLTESARP VLRGEMPLQL AVPRVINLKP RANQKSYGGN YDRKLFAKLR
KLRKSIADED NIPPYVVFSD ATLLEMAEMM PITAGELLNI NGVGHRKLER FGAPFMNMIR
DHVDNDDE
|
|---|
| |