Gene Pecwa_4152 details

Gene Information

• Locus tag: Pecwa_4152
• Symbol: rhtB
• ID: 8532585
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: +
• Start bp: 4576291
• End bp: 4576911
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 55%
• Product: homoserine/homoserine lactone efflux protein
• Protein accession: YP_003261483
• Protein GI: 261823377

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000943916
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATTGG ATTGGTGGTT AACCTACTTA CTCACAACGC TTATTCTCAG TCTGTCGCCC 
GGTTCGGGTG CCATCAATAC CATGAGCACT GGCATCAGCC ACGGCTATCG CGGCGCAGCG 
GCCTCCATCT GTGGCTTGCA GGTCGGGCTG GCGATTCATA TCGTGCTGGT CGGCATCGGG 
TTAGGCGCAT TGCTTAACCA GTCCGTGCTG GCTTTCGATG TGTTGAAATG GCTGGGCGCA 
GCGTATCTGA TTTGGTTAGG TATTCAGCAG TGGCGCGCCG CTGGCGCACT CGACCTTCAG 
GCGCTTGCCA GCGCCATGCC GCGTCGTAAG CTGTTTAAAC GTGCGATATT GGTCAACCTG 
ACCAACCCGA AAAGTATTGT ATTTCTGGCA GCGCTGTTTC CGCAGTTCAT CATCCCCCAT 
CAACCACAGG CCGCACAGTA TCTGGTATTG GGCATCACCA CAGTTGTGGT CGATATTATC 
GTGATGATTG GCTACGCCAC GCTAGCCACG CGTATCGCTG GGTGGCTGAA AGGTCCACGG 
CAGATGAAAA CACTCAACCG GATATTTGGA TCGCTATTCG TGCTAGTCGG CGCATTACTC 
GCCACAGCGA GAAAGGCCTG A 

 

Protein sequence

MTLDWWLTYL LTTLILSLSP GSGAINTMST GISHGYRGAA ASICGLQVGL AIHIVLVGIG 
LGALLNQSVL AFDVLKWLGA AYLIWLGIQQ WRAAGALDLQ ALASAMPRRK LFKRAILVNL 
TNPKSIVFLA ALFPQFIIPH QPQAAQYLVL GITTVVVDII VMIGYATLAT RIAGWLKGPR 
QMKTLNRIFG SLFVLVGALL ATARKA