| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_4036 |
|---|
| Symbol | |
|---|
| ID | 8532469 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 4441723 |
|---|
| End bp | 4442847 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | Pectate lyase/Amb allergen |
|---|
| Protein accession | YP_003261372 |
|---|
| Protein GI | 261823266 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACC TATTGCCTAC GGCAGCCGCT GGATTGTTAT TACTCGCGGC CCAACCAGCG
ATGGCCGCAA ATACGGGTGG CTATGCCACC ACAGATGGTG GAGATGTTTC CGGCGCCGTG
AAAAAAACCG CACGTTCCCT GCAAGAAATA GTGGATATTA TTGAAGCCGC GAAAGTGGAT
TCAAAAGGCA AGAAAGTCAA AGGCGGCGCT TACCCACTCA TTATCACCTA TAACGGTAAT
GAAGACTCAT TAATCAAAGC GGCTGAAAAG AATATCTGCG GCCAGTGGAG TAAGGACGCC
CGCGGCGTAC AAATCAAAGA GTTCACCAAA GGTATTACCA TTCAGGGTAC CAATGGCTCA
TCCGCCAACT TTGGCGTCTG GATCGTGAAC TCCTCTAACG TCGTGGTACG TAATATGCGC
TTCGGTTATA TGCCGGGCGG TGCGCAAGAC GGTGATGCCA TTCGTGTTGA TAACTCTCCG
AACGTCTGGA TTGACCATAA CGAGATCTTT GCCAAAAATT TTGAGTGTAA GGGCACACCA
GACAACGACA CGACTTTTGA GTCAGCGGTT GATATCAAGA AAGGATCAAC TAACGTCACG
GTATCCTACA ACTACATTCA TGGCATCAAG AAAGTCGGTC TAAGCGGCGC AAGCAATACG
GACACCGGTC GTAACCTGAC TTACCATCAC AATATCTATC GCGATGTTAA TTCACGTCTG
CCGCTGCAGC GTGGTGGCCT GGTTCATGCC TACAACAACC TGTATGACGG CATCACTGGC
TCTGGCTTTA ACGTTCGCCA GAAAGGGATC GCGCTGATCG AAAGTAACTG GTTCGAAAAT
GCACTGAACC CAGTGACGGC ACGTAACGAC AGCTCCAACT TTGGTACCTG GGAGTTGCGT
AACAACAACA TCACCAAACC GGCAGACTTC TCCAAATACA ACATTACTTG GGGTCGCCCT
TCCACACCTC ACGTCAATGC CGATGATTGG AAAAGTACCG GCAAATTCCC TTCCATTTCT
TACAAATACA CACCAGTTTC GGCGCAGTGC GTGAAGGATA AACTGGCAAA CTATGCTGGC
GTAGGTAAAA ACCTGGCAGT ACTGACAGCA GCTAACTGCA AATAA
|
|---|
| Protein sequence | MKYLLPTAAA GLLLLAAQPA MAANTGGYAT TDGGDVSGAV KKTARSLQEI VDIIEAAKVD
SKGKKVKGGA YPLIITYNGN EDSLIKAAEK NICGQWSKDA RGVQIKEFTK GITIQGTNGS
SANFGVWIVN SSNVVVRNMR FGYMPGGAQD GDAIRVDNSP NVWIDHNEIF AKNFECKGTP
DNDTTFESAV DIKKGSTNVT VSYNYIHGIK KVGLSGASNT DTGRNLTYHH NIYRDVNSRL
PLQRGGLVHA YNNLYDGITG SGFNVRQKGI ALIESNWFEN ALNPVTARND SSNFGTWELR
NNNITKPADF SKYNITWGRP STPHVNADDW KSTGKFPSIS YKYTPVSAQC VKDKLANYAG
VGKNLAVLTA ANCK
|
|---|
| |