| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3981 |
|---|
| Symbol | secY |
|---|
| ID | 8532414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 4399997 |
|---|
| End bp | 4401328 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | |
|---|
| Product | preprotein translocase subunit SecY |
|---|
| Protein accession | YP_003261318 |
|---|
| Protein GI | 261823212 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.192366 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGC AACCAGGATT AGATTTTCAG AGTGCTAAAG GCGGAGTTGG TGAACTGAAG
CGCAGACTTT TGTTTGTTAT CGGTGCGCTA ATTGTTTTCC GTATTGGCTC TTTTATTCCG
ATCCCTGGTA TTGATGCCAC TGTGCTTGCC AAATTGCTTG AACAGCAGCG AGGCACCATC
ATTGAAATGT TTAACATGTT CTCTGGTGGT GCTCTCAGCC GTGCTTCTAT CTTTGCACTG
GGTATTATGC CATATATTTC GGCATCGATT ATTATCCAGT TGCTGACGGT GGTTCATCCC
ACCTTGGCTG AAATAAAGAA AGAAGGGGAG GCTGGCCGTC GTAAGATTAG TCAGTATACC
CGCTACGGCA CCTTGGTGTT GGCCATATTC CAATCTATCG GTATTGCTAC CGGTTTGCCG
AATATGCCTG GAATGCAAGA TTTGGTCATA AATCCAGGTT TTGCTTTCTA CTTTACCGCT
GTTGTAAGCC TGGTTACTGG AACAATGTTC CTGATGTGGC TGGGAGAACA GATTACGGAG
CGTGGTATCG GTAACGGTAT CTCGATCATA ATCTTTGCTG GTATTGTTGC GGGTCTCCCG
CCGGCCATTG GCCATACCAT CGAGCAAGCT CGGCAAGGCG ACCTGCACTT CCTCCTGTTG
CTGTTGGTTG CAGTTTTAGT GTTTGCAGTA ACCTTCTTCG TTGTTTTCAT TGAGCGTGGT
CAACGTCGTA TCGTCGTTAA TTATGCAAAG CGTCAACAAG GTCGTCGTGT TTATGCAGCA
CAGAGTACGC ATTTACCGCT GAAAGTGAAT ATGGCCGGGG TTATTCCTGC GATCTTCGCT
TCCAGTATTA TTCTGTTCCC TGCCACGATT GCATCTTGGT TTGGGGGCGG TACCGGTTGG
AACTGGCTGA CAACTATTTC GCTGTATTTG CAGCCCGGAC AACCGCTTTA TGTGTTACTC
TATGCGTCTG CAATCATCTT CTTCTGTTTC TTCTACACTG CGTTGGTTTT CAACCCGCGT
GAAACAGCAG ATAACCTGAA GAAGTCCGGT GCATTCGTGC CAGGAATTCG TCCGGGAGAG
CAAACGGCGA AATATATCGA TAAAGTGATG ACTCGCCTGA CTCTGATTGG TGCGATGTAT
ATTACTTTTA TCTGCCTGAT CCCGGAGTTT ATGCGTGACG CAATGAAAGT GCCTTTCTAT
TTTGGGGGTA CATCTTTATT GATCGTTGTT GTCGTCATCA TGGACTTTAT GGCTCAAGTG
CAAACTCTGA TGATGTCGAG TCAATATGAG TCTGCATTGA AGAAAGCAAA CCTGAAAGGC
TATAACCGTT AA
|
|---|
| Protein sequence | MAKQPGLDFQ SAKGGVGELK RRLLFVIGAL IVFRIGSFIP IPGIDATVLA KLLEQQRGTI
IEMFNMFSGG ALSRASIFAL GIMPYISASI IIQLLTVVHP TLAEIKKEGE AGRRKISQYT
RYGTLVLAIF QSIGIATGLP NMPGMQDLVI NPGFAFYFTA VVSLVTGTMF LMWLGEQITE
RGIGNGISII IFAGIVAGLP PAIGHTIEQA RQGDLHFLLL LLVAVLVFAV TFFVVFIERG
QRRIVVNYAK RQQGRRVYAA QSTHLPLKVN MAGVIPAIFA SSIILFPATI ASWFGGGTGW
NWLTTISLYL QPGQPLYVLL YASAIIFFCF FYTALVFNPR ETADNLKKSG AFVPGIRPGE
QTAKYIDKVM TRLTLIGAMY ITFICLIPEF MRDAMKVPFY FGGTSLLIVV VVIMDFMAQV
QTLMMSSQYE SALKKANLKG YNR
|
|---|
| |