| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3968 |
|---|
| Symbol | def |
|---|
| ID | 8532401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 4391609 |
|---|
| End bp | 4392121 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_003261306 |
|---|
| Protein GI | 261823200 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.197764 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTTT TGCAGGTATT ACATTTCCCA GATGAGCGGC TCCGCATCAC TGCGCAATCC
GTAAAAGAAG TCAATGCAGA TATTCAACGT ATCGTGGATG ATATGTTCGA TACCATGTAC
GAAGAAGAAG GTATTGGGCT GGCCGCAACG CAGGTGGATA TTCATCAGCG TATTATTGTG
ATTGACGTCT CCGAAGAACG AGACCAACGG CTGGTGCTGA TCAATCCAGA GCTGATTGAA
AAGAGCGGTG AGACGGGTAT TGAAGAGGGT TGCTTGTCGA TCCCCGAAAC ACGCGCACTG
GTTCCCCGAG CAGAGCATGT AAAAGTGCGA GCATTGGATC GTGAAGGTAA AGTATTCGAG
CTTGAAGCAA GCGAGCTACT TGCCATTTGC ATTCAGCATG AAATGGACCA CCTGGTTGGG
AAATTGTTTA TCGATTACCT TTCCCCGCTT AAACGCCAGC GTATCCGTCA AAAACTGGAA
AAGCTGGCTA AGCAGAACAG CCGAACCCAA TAA
|
|---|
| Protein sequence | MSVLQVLHFP DERLRITAQS VKEVNADIQR IVDDMFDTMY EEEGIGLAAT QVDIHQRIIV
IDVSEERDQR LVLINPELIE KSGETGIEEG CLSIPETRAL VPRAEHVKVR ALDREGKVFE
LEASELLAIC IQHEMDHLVG KLFIDYLSPL KRQRIRQKLE KLAKQNSRTQ
|
|---|
| |