Gene Pecwa_3871 details

Gene Information

• Locus tag: Pecwa_3871
• ID: 8532297
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: -
• Start bp: 4273869
• End bp: 4275803
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 57%
• Product: lytic murein transglycosylase
• Protein accession: YP_003261211
• Protein GI: 261823105

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.006684
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGGTGA TAAAAGCAGG TCATTGGTGG TACGCCGTTG CGGCGGTATG TCTGGCTGGG 
GTGTCCGGTC ATGTGCTGGC GGATTCTCTG GACGAACAGC GTCAGCGCTA TCAGCAGGTT 
AAGCAGGCAT GGGACAGCAA CCAGATGGAC ACGGTAGCGC AACTAATGCC GACGCTGCGC 
AGCTACCCGC TTTATCCTTA TCTTGAATAT CGCTCGCTTA CGCAGGATCT GAGCCAGGTC 
AGCGCGACGC AGGTGAAACA GTTTATGGCA ACGCACCCGA CGTTGCCGCC CGCTCGTAAT 
CTCAATACCA GCTTTGTCAA TGAACTGGCG CGCCGTCAGG ACTGGATCGG GCTGTTGGCA 
TTTAGCCCGC AGCCGCCAAA GCCGGTTAGC GCCCGCTGTA ACTTCTATTA CGCCCAATGG 
GCAACCGGTC AGCGTCAGGG CGTGTGGGAA GCCACGCGTG ATATCTGGCT GACCGGGCGT 
TCGCTTCCTA ACGTGTGCGA TAAACTCTTC TCCGTCTGGC AGCAGGCGGG CGAACAGACG 
CCGCTGACAA CGCTGGAACG TGCACGTCTG GCGATGGATG AAGGCAGCGC TAGTCTGGTG 
AGCTACCTCA TCAAGCAACT GCCCGACGAT TATAAAACGA TGGGCGATGC GCTGCTGAAA 
CTCCAGAATG ACCCCACTTC GTTGGAGAGC TTTGCTCGTA CCGTCGGGCC AACGGATTTC 
ACCCGTAAAG TCACGCTGTC AGCCTTCACG CGTACAGCGC GCCAGGATAC GGACAATGCC 
CGTTCGATGC TGCCAGTCAT TGCCCGTTTG CAAAAAATGA GCGCCGCAGA GCGTCAGGAT 
ATGGAAGAAA CCATCGCCTG GCGTTTGATG GGGAATGATG CTACGCCAGA GCAGGCGCAG 
TGGCGAGATG GCGTGGTGCG ACGGAGCACA TCGACCACCT TGCTGGAACG TCGCGTGCGC 
ATGGCGTTGG GCGCAGGCGA TCGTCAGGGT TTGACAAGCT GGATGGCGCG TTTGCCGGCG 
GAGGCGTTGC AGAAAGACGA ATGGCGCTAC TGGCGTGCCG TCGTGCTGTT GGAGCAGGGT 
AAACATCAGG AAGGCGAGAC ATTATTACGC AGCCTGATGC AGGAACGCGG GTTCTACCCG 
ATGGCGGCGG CGCAGAAACT GAACGAGCGC TATCCGATGA CTATCATGAC AGCCGTGAAG 
CCTGACCCTT CTTTATCACA ATTACCCGAA ATCACTCGCG TGCGGGAATT GATGTTCTGG 
CAGATGGATA ATCTGGCGCG TAGCGAGTGG GTCGGGCTGG TGGCGAATCG CAGTAAGCCG 
CAGCAGGAGG CGTTGGCTCG CTATGCGTTT GAACAGCGCT GGGCAGATTT AAGCGTACAG 
GCGACGATTG TCGCAAAACT GTGGGATCAT CTTGAAGAAC GCTTCCCGCT GGCCTGGAAT 
GATGAATTCC GCCGTGAAAC GCAGGGCAAA GGGATTAGCC AGAGCTATGC GATGGCAATC 
GCCCGTCAGG AGAGCGCCTG GAATCCGAAA GCGCGTTCGC CCGTCGGCGC ATCGGGTCTG 
ATGCAGTTGA TGCCTGCGAC GGCGCAGCAT ACCGCTAAAA TGAGCAATAT CACGTTCTAC 
AATAACAGTA GTCAGTTGTT CGATCCCGAG ACGAATATTC TGTTGGGAAC GAGCTATCTG 
GAGTACGTGT ACCAGACATT TGGTCGTAAC CGCATTCTGT CTTCTGCGGC TTACAATGCC 
GGGCCGTCGC GTGTGAATAC CTGGCTGAGG AATAGCGCGG GACGTATCGA TCCCGTTGCG 
TTTATCGAAA GTATCCCGTT CTCGGAAACA CGCGGTTACG TGAAAAATGT GCTGGCCTAT 
GACGTCTTCT ACCGCTATTT CCTCAATCAG CCAGCCAATG TGCTGACGGA TGGGGAATGG 
CAGCGGCGTT ACTGA 

 

Protein sequence

MQVIKAGHWW YAVAAVCLAG VSGHVLADSL DEQRQRYQQV KQAWDSNQMD TVAQLMPTLR 
SYPLYPYLEY RSLTQDLSQV SATQVKQFMA THPTLPPARN LNTSFVNELA RRQDWIGLLA 
FSPQPPKPVS ARCNFYYAQW ATGQRQGVWE ATRDIWLTGR SLPNVCDKLF SVWQQAGEQT 
PLTTLERARL AMDEGSASLV SYLIKQLPDD YKTMGDALLK LQNDPTSLES FARTVGPTDF 
TRKVTLSAFT RTARQDTDNA RSMLPVIARL QKMSAAERQD MEETIAWRLM GNDATPEQAQ 
WRDGVVRRST STTLLERRVR MALGAGDRQG LTSWMARLPA EALQKDEWRY WRAVVLLEQG 
KHQEGETLLR SLMQERGFYP MAAAQKLNER YPMTIMTAVK PDPSLSQLPE ITRVRELMFW 
QMDNLARSEW VGLVANRSKP QQEALARYAF EQRWADLSVQ ATIVAKLWDH LEERFPLAWN 
DEFRRETQGK GISQSYAMAI ARQESAWNPK ARSPVGASGL MQLMPATAQH TAKMSNITFY 
NNSSQLFDPE TNILLGTSYL EYVYQTFGRN RILSSAAYNA GPSRVNTWLR NSAGRIDPVA 
FIESIPFSET RGYVKNVLAY DVFYRYFLNQ PANVLTDGEW QRRY