| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3774 |
|---|
| Symbol | lpxC |
|---|
| ID | 8532200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 4165289 |
|---|
| End bp | 4166221 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
|---|
| Protein accession | YP_003261116 |
|---|
| Protein GI | 261823010 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000774648 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGATA AAATGATGAT CAAACAACGT ACATTAAAAC GTATTGTTCA GGCGACTGGT
GTCGGGTTAC ATACCGGCAA GAAGGTCACG TTGACCATGC GTCCTGCACC GGCAAATACC
GGGGTCATCT ATCGCCGCAC AGACTTGAAT CCCCCGGTTG ATTTCCCGGC TGATGCAAAA
TCCGTGCGTG ATACCATGCT CTGTACTTGC CTGGTTAATG AGCATGACGT GCGTATTTCT
ACGGTGGAGC ATCTTAACGC TGCACTTGCA GGGTTGGGCA TTGACAATAT TGTCATTGAT
GTTGACGCAC CGGAAATTCC AATTATGGAT GGCAGCGCCA GTCCGTTCGT TTACCTGCTG
TTAGATGCGG GTATCGAAGA ACTGAACTGC GCCAAGAAAT TTGTACGTAT CAAGCAACCC
GTGCGCGTTG ACGATGGCGA CAAGTGGGCC GAAATGAAAC CGTTTAACGG CTTCAGTCTG
GATTTCACTA TCGACTTCAA CCACCCGGCG ATTGATGCGG GCAACCAGCG CTATCGTTTG
GATTTCTCTG CTGATGCGTT TGTTCGCCAG ATCAGCCGTG CGCGTACCTT CGGCTTCATG
CGCGATATCG AATACTTGCA GTCTCGTGGG TTGTGCCTGG GCGGCAGTAT GGATTGTGCC
ATCGTCGTTG ACGATTACCG CGTGCTGAAC GAAGACGGTC TGCGTTTTGA AGATGAGTTT
GTCCGCCATA AAATGCTGGA TGCCATTGGT GACCTGTTTA TGTGTGGTCA TAACATCATC
GGTGCGTTTT CTGCATTTAA ATCCGGTCAT GCGCTGAACA ACAAACTGTT GCAGGCTGTG
CTGGCAAATC AGGAAGCGTG GGAATACGTG ACCTTTGAAG ACGAAGCTGA AATGCCGCTG
GCGTTTAAAG CACCGTCTAT CGTGTTGGCG TAA
|
|---|
| Protein sequence | MRDKMMIKQR TLKRIVQATG VGLHTGKKVT LTMRPAPANT GVIYRRTDLN PPVDFPADAK
SVRDTMLCTC LVNEHDVRIS TVEHLNAALA GLGIDNIVID VDAPEIPIMD GSASPFVYLL
LDAGIEELNC AKKFVRIKQP VRVDDGDKWA EMKPFNGFSL DFTIDFNHPA IDAGNQRYRL
DFSADAFVRQ ISRARTFGFM RDIEYLQSRG LCLGGSMDCA IVVDDYRVLN EDGLRFEDEF
VRHKMLDAIG DLFMCGHNII GAFSAFKSGH ALNNKLLQAV LANQEAWEYV TFEDEAEMPL
AFKAPSIVLA
|
|---|
| |