| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3604 |
|---|
| Symbol | |
|---|
| ID | 8532030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 3970768 |
|---|
| End bp | 3972339 |
|---|
| Gene Length | 1572 bp |
|---|
| Protein Length | 523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_003260947 |
|---|
| Protein GI | 261822841 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0287623 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGTTGA AAAATATTTC TATTCGCACC GGCTTATTAA CGTTATTGCT GTTAACAACC
CTGTTGCTGC TTATCGTCAG TAGTATGGGC GTGATCGCCA TTAAGAAAGA CAGGGAAACC
CTGGCTGCAC AAAATCAAAT TCAGGGGATT GAGTTAGGCA ACCTGATGAG CGGTTATAAC
CAAACGCTCA ACGCCCGCGC CTCGGCAACA CTCGCCGTCA GAAAAATTGA AATCGGGCTG
CTGGATGATG GCGCACGGGA AACCAGCGGC GTAGAGAAAC ATCTCCGTCA ATCCGAGGCA
GACATTGAAC GTGCGATCAA ATCGGTCGAT GCCGACCCAA AACGGCAGGC ACTGGCACAG
GAGGTGTTGA AAACCTATCA AGCCTATTTT CAGCAGGGTA TGACCCCGAT GCTGATCGCG
CTGCAAAAGC AGTATACCGA CGAATATTAT GACGTACTGG AAAAACAGCT CGGCCCACTG
AGCGAAGCCT TTGATGTGTC GATCCAAAAT TTCCGTCAGT ATGCCCAACA GCTTTCCGAA
CAGGGTTTGG CGCAGTCTGA ATATAATGAA CGCATGATGC TGTTACTGAT TGCCATTGCC
AGCCTGTTAT CCATCACGTT GGTCGCATTA TCTTGGGTCG CGCTGCGGCA CATGCTACTC
AAACCGCTGG ATTACGCCAT TGCACAGTTG GAGCAGGTCG CCGCTGGCAA CTTGACGAAC
CGCCTGATGC AAGGGGGAAA CAACGAATTG GGTCGGCTCA ACGACGCCAT CGGCCGCATG
CAGAGTGCGC TGCTGGAATC GGTTAGCCAG GTGCGCGATG CCAGCACGCA AATCGACTTA
GGTAGCCGCG AACTGTTTGA AGAAAATTCC CAGCTTTCCC TGCGCACCGA AGAGTCCGTT
GCCGCACTGG AGCAAACGGT GGCGAGCATG GAGCAGTTGA GCGCCACGGT GAAGCTCAAT
GCCGACCATG CCGAGCTTGC GCATCAACTC GCCAATAATG TCTCAAACAC CAGCAGCCGC
AGCAATGAAT CGGTCTGTTA TGTTATTGAA AAAATGCAGG AGATTGCCAC CAGTGCCAAA
CGCATCAATG ACATCCTCAG CGTCATCGAC GGCATCGCGT TTCAAACTAA TATTCTGGCG
CTGAATGCCT CCGTCGAATC CGCCCGTGCA GGTGAACAAG GCAGAGGCTT TGCCGTTGTC
GCCGGAGAAG TGCGTAATCT GGCGCAGCAC AGCGCGCAGG CTGCGAAAGA GATCCGTTCG
CTGATTGTAG ATTCACAAAC TCGCGTGTCC GAAGGGCTTG AATTAGCCTC TAAAGCAGGC
GAAACCATGG ATGAAGTGAC CGACGAAATC GTCCGTATTA CGCAACTGAT GCGAGACATT
TCTACCGCTA CGCAAGAACA ACATCGCGGT ATTGAGCAGG TGAATGTCGC CTTTACGCAG
ATCGACAAGG TTGCTCAGCA CAACGCACAG CTCGTCAAAG CCTCATCCGC CACCACGCAA
TCGTTGGAAC AACAGTCTCA ACAGCTCATG CGGTCTATGT CGCTATTTCA GGTAGAACCT
CGACTTTCCT AA
|
|---|
| Protein sequence | MGLKNISIRT GLLTLLLLTT LLLLIVSSMG VIAIKKDRET LAAQNQIQGI ELGNLMSGYN
QTLNARASAT LAVRKIEIGL LDDGARETSG VEKHLRQSEA DIERAIKSVD ADPKRQALAQ
EVLKTYQAYF QQGMTPMLIA LQKQYTDEYY DVLEKQLGPL SEAFDVSIQN FRQYAQQLSE
QGLAQSEYNE RMMLLLIAIA SLLSITLVAL SWVALRHMLL KPLDYAIAQL EQVAAGNLTN
RLMQGGNNEL GRLNDAIGRM QSALLESVSQ VRDASTQIDL GSRELFEENS QLSLRTEESV
AALEQTVASM EQLSATVKLN ADHAELAHQL ANNVSNTSSR SNESVCYVIE KMQEIATSAK
RINDILSVID GIAFQTNILA LNASVESARA GEQGRGFAVV AGEVRNLAQH SAQAAKEIRS
LIVDSQTRVS EGLELASKAG ETMDEVTDEI VRITQLMRDI STATQEQHRG IEQVNVAFTQ
IDKVAQHNAQ LVKASSATTQ SLEQQSQQLM RSMSLFQVEP RLS
|
|---|
| |