Gene Pecwa_3562 details

Gene Information

• Locus tag: Pecwa_3562
• Symbol: ligA
• ID: 8531988
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: -
• Start bp: 3925187
• End bp: 3927232
• Gene Length: 2046 bp
• Protein Length: 681 aa
• Translation table: 11
• GC content: 55%
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_003260905
• Protein GI: 261822799

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAGAAAG AACCAGCCGA AGTGAATACG GTCGCACTGC GGGTAGCGGA GTTGCGCCGG 
GTCTTACGCC ATCACGAATA CAAATATCAC GTTGAAGATG CGCCTGAAAT TCCTGATAGC 
GAATATGACA AACTCATGCA GGAACTGAAA GCGTTAGAGG CAGATCACCC AGAGCTGGTG 
ACGAGTGATT CTCCTACGCA GCGCGTCGGC GCGGCACCGC TAGCGGCATT TGAGCAGGTC 
CGTCATGAAG TGCCGATGTT ATCGTTGGAT AACGTATTTG ATGAAGAGAG CTATCTGGCC 
TTCAGCAAGC GAATTGGTGA CAGGCTGAAG AACGGTGACG ACCTGACATT CTGCTGCGAA 
CTGAAACTGG ATGGTTTGGC TGTCAGCCTG TTATATGAAG ATGGCGTTCT GGTACAGGCC 
GCCACGCGTG GGGATGGAAC GACTGGGGAA AACATCACCA GCAACATCCG TACCGTTGGA 
GCGATCCCAT TGCGCCTTGA GGGTGAGAAT ATTCCGCGCC GTGTTGAAGT ACGCGGTGAA 
GTGTTTATGA AGCATGGCGG TTTTGAAAAG TTGAATGAAG AGGCTCGCCG CACAGGAAGC 
AAAGTCTTTG CTAACCCGCG TAACGCTGCC GCGGGATCGC TGCGCCAACT CGACCCACGC 
ATCACGGCTA AACGCCCACT GACCTTCTTC TGCTATGGCG TCGGCCTGCT GGAAGGCGGT 
GAACTGCCCG CTAGTCACTG GGAGCGCCTG ATGCAGTTCA AGGCATGGGG ATTGCCAGTG 
AGTGACAGAA TCAAGCTCTG TACCGGCCCG GCCGAGGTGC TCGATTTTTA TCGTCAGGTT 
GAACAGACCC GCAGTGAGTT AGGTTTCGAT ATTGACGGTG TCGTCGTTAA AGTTGACTCG 
TTGGCGTTGC AGGAACGATT AGGGTTTGTT GCTCGTGCGC CGCGCTGGGC GGTGGCCTTT 
AAATTCCCCG CGCAGGAACA GCTAACCTGG GTGCGCGATG TCGAATTTCA GGTGGGACGG 
ACGGGGGCGA TTACGCCCGT TGCGCGTCTG GAGCCGGTTG CTGTGGCTGG CGTGATTGTC 
AGCAACGCCA CATTGCATAA TGCCGATGAA ATTGAGCGAC TAGGTTTGCA GATTGGCGAT 
CGTGTCATTG TGCGTCGAGC GGGGGATGTG ATCCCGCAGA TCGTCGGTAT TGTTGAATCT 
GAGCGGCCAG AAACCGTGCA ACCGATCGTC TTCCCTGTTG CTTGCCCGGT GTGTGGATCT 
GACGTTGAGC GTGTGGAAGG GGAAGCCGTC ACGCGTTGTA CCGGTGGTTT GATCTGTGGT 
GCCCAGCGTA AAGAGGCGCT GAAGCATTTT GTTTCCCGCC GTGCGCTAGA TGTTGAGGGT 
ATGGGCGATA AGATCATCGA TCAACTGGTG GAAAAAGAGT ACGTCAAAAC GCCTGCCGAT 
CTGTTTCGTC TAAGCGCCGG GAGCATGACG GGGCTGGATC GCATGGGGCC GAAGTCCGCG 
ATGAACGTGG TCAACGCACT GGAAAAGGCA AAAAGCACCA CGCTGGCGCG TTTCTTGTAC 
GCGTTGGGGA TCCGTGACGT TGGAGAATCG ACTGCCGCCA ATCTGGCTGC CCATTTTGGT 
TCGCTGGAGG CGCTTTTTGC GGCAGATGAA GACGCGCTGC TGGCGGTGCC GGATGTTGGT 
AAAATCGTTG CCGCGCATGT GCGCCATTTT CTTGAAGAAG AGCACAACCA AACTGTGATC 
CGCGAGCTGA CCGATCCTGC CGGCATCAAC ATCCACTGGC CTGAGGTTCA GGTCGTCAAT 
GCCGAAGAGA TCGACAGCCC GTTTGCGGGA AAGACGGTGG TATTGACCGG ATCGCTGAGT 
ATTTTGTCCC GTGATGAAGC CAAAGATCGG CTAACGGCGT TAGGGGCAAA AGTCAGTGGT 
AGCGTCTCGA AGAAAACCGA TATGGTGATT GCCGGTGAAG CCGCAGGCTC TAAACTGGCG 
AAGGCGCAAG AGTTGGGGAT TGCGGTGATC GATGAGGCGG AAATGATCCG ATTATTAGGG 
GCGTAA 

 

Protein sequence

MKKEPAEVNT VALRVAELRR VLRHHEYKYH VEDAPEIPDS EYDKLMQELK ALEADHPELV 
TSDSPTQRVG AAPLAAFEQV RHEVPMLSLD NVFDEESYLA FSKRIGDRLK NGDDLTFCCE 
LKLDGLAVSL LYEDGVLVQA ATRGDGTTGE NITSNIRTVG AIPLRLEGEN IPRRVEVRGE 
VFMKHGGFEK LNEEARRTGS KVFANPRNAA AGSLRQLDPR ITAKRPLTFF CYGVGLLEGG 
ELPASHWERL MQFKAWGLPV SDRIKLCTGP AEVLDFYRQV EQTRSELGFD IDGVVVKVDS 
LALQERLGFV ARAPRWAVAF KFPAQEQLTW VRDVEFQVGR TGAITPVARL EPVAVAGVIV 
SNATLHNADE IERLGLQIGD RVIVRRAGDV IPQIVGIVES ERPETVQPIV FPVACPVCGS 
DVERVEGEAV TRCTGGLICG AQRKEALKHF VSRRALDVEG MGDKIIDQLV EKEYVKTPAD 
LFRLSAGSMT GLDRMGPKSA MNVVNALEKA KSTTLARFLY ALGIRDVGES TAANLAAHFG 
SLEALFAADE DALLAVPDVG KIVAAHVRHF LEEEHNQTVI RELTDPAGIN IHWPEVQVVN 
AEEIDSPFAG KTVVLTGSLS ILSRDEAKDR LTALGAKVSG SVSKKTDMVI AGEAAGSKLA 
KAQELGIAVI DEAEMIRLLG A