| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3508 |
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| Symbol | truD |
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| ID | 8531934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium wasabiae WPP163 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013421 |
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| Strand | - |
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| Start bp | 3858598 |
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| End bp | 3859644 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_003260851 |
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| Protein GI | 261822745 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAATA GCGAACAACT CGTCTGGCTG CACGGTGAAC CACAGGCTAC TGGCTCATTG
AAATCCACTG CGGAAGATTT TCTGGTAGTG GAAGATCTGG GGTTTCTGCC CGATGGTGAT
GGTGAACAGG TTTTGGTACG CGTACGCAAG CGCGGCTGCA ATACGCAATT TGTGGCTGAG
ATGCTGGCAA AATTTACTCG CCTGCCGCTG CGTGCTGTCA GCTACGCTGG CCTGAAAGAT
CGCCATGCCG TCACCGAGCA GTGGTTTTGC CTGCACATGC CGGGAAAGGA GACGCCCGAT
TTCTCCCCGC TGGAGTTGGA AGGCTGTGAC GTTCTTGAGG TGACCCGCCA CCGCCGCAAA
TTGCGCATCG GTGCGCTACG GGGTAACCAT TTTACCTTAG TGTTGCGTCA GGTGAGCGAT
CGACACGAGG TGGACGCGCG TTTGGCGCTG ATTGCGACTA ACGGTGTCCC TAATTATTTC
GGTAGCCAGC GTTTTGGGCG CAACGGGAAT AATCTTGAAC AGGCGCGTCT TTGGGCCAAT
AACGAAATTC GAGTAAAAGA ACGCAGTAAA CGTAGCTTTT ATCTTTCTGC CAGCCGCAGT
GCGATGTTTA ATCAGGTTGC CAGTACGCGA CTGGCGCAGC AGCAAGCGAA AACCGTTTTG
TGTGGTGATG CATTGCAGCT AACGGGGCGC GGCAGTTGGT TTGTCGCCAA ACCTGACGAA
CTGGATGCCT TACAGGTGCG TCTTGACGCC GGCGAACTCC AGATTACTGC ACCGCTACCC
GGCGATGGTG AACTGGGCAC GCAGGATGAC GCGCAAGTAT TTGAAGCGCA AGCTTTGACC
GGACAAGAAA CGCTATGGTC TTTGGTCAAG CGTGAGCGGG TTGAACCTGC TCGGCGTGCT
GTACTGCTAT ATCCGCAGCA GATGCAGTGG GAATGGCAGG ATGATACAAC AGTAGAAGTG
AAATTCTGGC TACCTGCGGG CAGCTTTGCG ACCAGTGTGG TACGTGAATT ACTGCATTCA
CAGCAGGATA CCGATATTGG TGCCTGA
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| Protein sequence | MENSEQLVWL HGEPQATGSL KSTAEDFLVV EDLGFLPDGD GEQVLVRVRK RGCNTQFVAE
MLAKFTRLPL RAVSYAGLKD RHAVTEQWFC LHMPGKETPD FSPLELEGCD VLEVTRHRRK
LRIGALRGNH FTLVLRQVSD RHEVDARLAL IATNGVPNYF GSQRFGRNGN NLEQARLWAN
NEIRVKERSK RSFYLSASRS AMFNQVASTR LAQQQAKTVL CGDALQLTGR GSWFVAKPDE
LDALQVRLDA GELQITAPLP GDGELGTQDD AQVFEAQALT GQETLWSLVK RERVEPARRA
VLLYPQQMQW EWQDDTTVEV KFWLPAGSFA TSVVRELLHS QQDTDIGA
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