| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3462 |
|---|
| Symbol | |
|---|
| ID | 8531882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 3805441 |
|---|
| End bp | 3806379 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein |
|---|
| Protein accession | YP_003260806 |
|---|
| Protein GI | 261822700 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGTT TTTTCCGTTA CAGCTTCATT TTCATTGCGT CGCTGGTACT TCCTGCGATG
GCCTATTCTG CCGATGTAGT ACGGATCGGA TATCAAAAGT CGGCGACAAC GTTAGTTTTG
CTAAAAGAAG AAGGTTCTCT GGAAAATAGG TTACGTTCAC AAGGCGTTAA AGTGGAGTGG
ACACAGTTTC CCGGTGGACC TCAACTGCTG GAAGGGCTGA ATATTGGAGC GATTGATTTT
GGTTTTACGG GAGAAACACC GCCAGTATTC GCTCAGGCGG CAAATGCTAA TTTGGTTTAT
GTCGCCAATG AACCTGCTTC CCCGGCGGCG GAAGCGATCC TGGTTCTTAA GGATTCGCCG
CTGAGCTCAG TGGCACAGCT AAAAGGGAAA AAAGTCGCCT TAAATAAAGG CTCTAACGTT
CATTACTTAT TAGTACGGGC GTTGTTCGAA GCTGGCCTGC AATATAGCGA TATCACACCC
GTTTATTTAC CCCCCGCAGA CGCGCGTGCG GCATTTGAAA ATGGCAGTGT CGATGCCTGG
GTTATCTGGG ATCCTTTCAG TGCTGCGGCA GAAAAACAGA TCCATGCTCG GGTGCTGCGC
GATGGGCGCG GGATTGTTGA TAATTACCAG TTTTATCTGG CAAGGCGCGA TTTTGCCGAC
AAACATCCAC ATATCATCAC CGCGCTAATC GAAGAGGTTC GTCTGATTGG CAAGAAAGCC
GTCGACTCTC CGGAAGAGGT TGCCCGTCAG ATCGCCCCCT TGTTAGGGCT TCCTGCAAAT
ATCGCCCAGC TTGCCGTTGA GAGGCAGGGC TATGATGCAC AGTTTATTTC GCCTGAAGCG
ATTGCCAGCC AGCAGCGTAT CGCCGATACC TTTGTTGGCC TGAAATTGAT TCCGAAAAAG
CTGGATATCA AGCAAGCGGT ATGGACTCCA CCTCAATGA
|
|---|
| Protein sequence | MIGFFRYSFI FIASLVLPAM AYSADVVRIG YQKSATTLVL LKEEGSLENR LRSQGVKVEW
TQFPGGPQLL EGLNIGAIDF GFTGETPPVF AQAANANLVY VANEPASPAA EAILVLKDSP
LSSVAQLKGK KVALNKGSNV HYLLVRALFE AGLQYSDITP VYLPPADARA AFENGSVDAW
VIWDPFSAAA EKQIHARVLR DGRGIVDNYQ FYLARRDFAD KHPHIITALI EEVRLIGKKA
VDSPEEVARQ IAPLLGLPAN IAQLAVERQG YDAQFISPEA IASQQRIADT FVGLKLIPKK
LDIKQAVWTP PQ
|
|---|
| |