| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3356 |
|---|
| Symbol | |
|---|
| ID | 8531771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 3682384 |
|---|
| End bp | 3683580 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_003260701 |
|---|
| Protein GI | 261822595 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.237663 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAC TGACAATTCT TGGTTCCACC GGCTCTATTG GCGTTAGTTC TCTGGCGGTA
ATTAAAGCTA ACCCCGATAA ATTTGCCGTG CGCGCGCTAT CCGCTGGGTA TAACGTCAAA
CTGATGGTGG AGCAATGCCT CACTTTCCAA CCTGCCTATG CCTCAATGGC TGATGAAGCT
TCTGCAACGG TTCTGCGCCA GCAGTTGGCG GAATACGGCT GTAAAACAGA GGTGCTGGCG
GGCGTTCAGG CAGCGTGTGA TCTTGCTGCA TTGGATGGCG TCGATCAGGT CATGGCCGCG
ATTGTGGGAG CTGCTGGGCT ACTGCCGACA TTGGCTGCAA TCCATGCGGG AAAACAGGTT
TTGTTGGCGA ATAAAGAATC ACTGGTTACC TGTGGACGTC TCTTTATGGA CGCCGTAGCA
CAAAGTGGTG CGCAGCTTTT ACCGATTGAT AGTGAACATA ATGCGATTTT TCAGAGTTTA
CCTGAGCAAA TTCAACGCCA ATTAGGTTAC GCTTCATTGT CGCAACATGG GGTTGAACGC
ATTATTTTGA CCGGTTCTGG TGGGCCTTTT CGTGAAACGT CGGTGTCGGC GCTGGCGGAT
ATGACGCCGG ATCAGGCGTG TGCGCATCCA AACTGGTCAA TGGGGCGCAA AATTTCGGTT
GATTCAGCCA CGATGATGAA CAAGGGGCTG GAGTATATTG AAGCACGTTG GTTGTTTAAT
GCCTCTGCTG AACAGATGGA AGTCATTATT CATCCGCAAT CGGTGATTCA TTCTATGGTG
CGTTATCGTG ATGGTAGCGT TCTGGCGCAG TTGGGCTCGC CCGATATGCG CACGCCGATT
GCCCATGCGA TGGCGTATCC CGAACGTGTG ACGTCGGGCG TAAAATCGTT AGATTTTTGC
CAAATTGGTG CGCTGACATT TTTAGCGCCG GACTATGCAC GCTATCCTTG TTTACAGTTG
GCGATTGACG CTTGTCATCA TGGTCAATCG GCTACCACGG CATTGAACGC TGCAAATGAA
ATTGCAGTAG CGGCATTTTT GCAGTCGCAG ATACGCTTTA CGGATATCGC GGCGGTAAAT
CGGGATGTCA TTGAACAACT TACACTGCCA GAGCCTGCCA GTGTTGACGA TGTTCTGTTC
ATCGATCGCT GGGCCAGACA GGCCGCAGCA CAGACTCTGA CACATTACAC GCGATAG
|
|---|
| Protein sequence | MKQLTILGST GSIGVSSLAV IKANPDKFAV RALSAGYNVK LMVEQCLTFQ PAYASMADEA
SATVLRQQLA EYGCKTEVLA GVQAACDLAA LDGVDQVMAA IVGAAGLLPT LAAIHAGKQV
LLANKESLVT CGRLFMDAVA QSGAQLLPID SEHNAIFQSL PEQIQRQLGY ASLSQHGVER
IILTGSGGPF RETSVSALAD MTPDQACAHP NWSMGRKISV DSATMMNKGL EYIEARWLFN
ASAEQMEVII HPQSVIHSMV RYRDGSVLAQ LGSPDMRTPI AHAMAYPERV TSGVKSLDFC
QIGALTFLAP DYARYPCLQL AIDACHHGQS ATTALNAANE IAVAAFLQSQ IRFTDIAAVN
RDVIEQLTLP EPASVDDVLF IDRWARQAAA QTLTHYTR
|
|---|
| |