| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3318 |
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| Symbol | |
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| ID | 8531733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium wasabiae WPP163 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013421 |
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| Strand | + |
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| Start bp | 3639129 |
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| End bp | 3640541 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_003260664 |
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| Protein GI | 261822558 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACAAAC CATTTTTTAT CAGGGGGACG TTTTCTCTGC GCAATATCGC TTTTCTGACT
CACACACCAC GCTATGTGCT GGCGCTCGGA CTCGCCTGCG GTAGCCTCGC AGCCTTCTAT
AGCTCACCGT TACTCGCCCA GACCGTCGCG TTTGACTGGT CTGCCGCGCC GACAGAACAA
CAGGTCGATA GCCTGGATCT CAAGCAGGCC ATTCTTCGTG CGTTCGCACG CAACCCGCAA
ATCGCCCAGG CTTCGGCGCA AATTCGCGTC GGTGAAGCCG ATCTGCGCGT GGCGCAAAGC
GCCTGGTTTC CGCAAATCGG TTTGAGCGGC AATGTCGGCC GGTCGGATCA AAGTGATACC
AGCAGCACGA TGAGCAACAA CTCCACTGCG GGCATCACGC TGAAACAGCT CCTGTACGAT
TTTGGCAAGA CGGGCGGCAG TATTGATGAG CAGCACAGCC TGTCAGATGC CTATCGCTAC
CAACTCTATG GCGTCATGAC CACGGTCGGC CAGCAAACCT TGCTCACTTA CCTGAAAATC
AAACGCTATC AGGAACTAAA TCAGGCGGCA GAACGCAATA TCACGTCACT CAGTCAGGTA
AAAGACATCG CTACGCTCCG CTCCGAGGCT GGTCTCAGTA CGCAATCAGA TATCTTGCAG
GCAGAAACCC GTATTGCAGG CATGAAGGCA ACGCTGGAAC AATACCGGGC GCTGGAGCGT
TCCTCACTAG CACAACTCAG CGTGTTGACT GGCGTCATCC CCACCGCCCT GCCCGATCTG
CCCCGCGCGC TGCTGCAACA AAAGATTACG CTCAAAGCAC TCCCCTACCA GCAAAGTAAC
GCGGTGTTAA GCGCGCAGTC CAAACAAGAG GCCTCGCGCC AGCGGATCCG TCAGGCGGAA
GCCCAGCACT GGCCCACCAT TGCCGTGCAA GCAGGCCGTA CCCGCTATGA AACCGACCGG
CGTAATTACT GGGATGACCA GTTGCAACTG GTTGTGGAAG CTCCGCTTTA TCAGGGCGGG
GCTGTCAGTG CGCGCGTTGA TGCCGCGTCA GGCACGCGTG AAGCGGCGCA GGCCGAAGTT
GAAGCGGTAA AATTGGATAT GAACCAGAAA GCCTCAACCG CCTATGCCGA CCTTATTGGT
GCGCAGCAGC GTGAAAAAGC CAGTCAGCAG CAAATCACCA GCGCGACCTA CACCCGCAAC
GTTTATCAGG ATGAGTACAA ACTCAGCAAG CGCAGCCTGA ACGATCTGCT CAGCGTCGAA
CAAGACGTGT TGCAGGCCGA AACCTCACGT ATCGGTGCGT TATACGACGG CTGGGAGGCG
GCGGTTAACT ATGCCGCTGC CGTCGATAAC CTGTTGGATA TGCTGGGTAT TGAGCGTTAT
CAAGCCAGTG GCGAGACGTT ACCGTCACTG TGA
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| Protein sequence | MHKPFFIRGT FSLRNIAFLT HTPRYVLALG LACGSLAAFY SSPLLAQTVA FDWSAAPTEQ
QVDSLDLKQA ILRAFARNPQ IAQASAQIRV GEADLRVAQS AWFPQIGLSG NVGRSDQSDT
SSTMSNNSTA GITLKQLLYD FGKTGGSIDE QHSLSDAYRY QLYGVMTTVG QQTLLTYLKI
KRYQELNQAA ERNITSLSQV KDIATLRSEA GLSTQSDILQ AETRIAGMKA TLEQYRALER
SSLAQLSVLT GVIPTALPDL PRALLQQKIT LKALPYQQSN AVLSAQSKQE ASRQRIRQAE
AQHWPTIAVQ AGRTRYETDR RNYWDDQLQL VVEAPLYQGG AVSARVDAAS GTREAAQAEV
EAVKLDMNQK ASTAYADLIG AQQREKASQQ QITSATYTRN VYQDEYKLSK RSLNDLLSVE
QDVLQAETSR IGALYDGWEA AVNYAAAVDN LLDMLGIERY QASGETLPSL
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