Gene Pecwa_3002 details

Gene Information

• Locus tag: Pecwa_3002
• ID: 8531408
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: -
• Start bp: 3265996
• End bp: 3267927
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 57%
• Product: thiamine pyrophosphate protein domain protein TPP-binding protein
• Protein accession: YP_003260355
• Protein GI: 261822249

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATACGT GTCGCATCAC CATGGCACAA GCGCTAGTCA GGTTTCTCAA CCAGCAGTAC 
ATCAGCGTAG ACGGTGAAGA AACCCCCTTT GTGCAGGGCG TCATGACCAT TTTTGGTCAC 
GGTAATGTGT TGGGCATCGG TCAGGCATTA GAGCAGGAAG CGAACTGCCT CACGGTGCAT 
CAGGGGTGCA GCGAACAGGG AATGGCGCAC ATCGCCGTTG GGTTTGCTAA ACAACACAAG 
CGGCGGAAAA TCTATGCGGT GACTTCTTCA GTGGGGCCCG GCGCGGCAAA TATGGTGACC 
GCTGCGGCGA CCGCTACCGC CAACCGTATT CCCGTGCTAC TTCTCCCTGG CGATCTCTTT 
GCCTGCCGCC AGCCGGACCC GGTATTGCAG CAGGTCGAGC AATATCACGA TCTGTCCATT 
AGCACCAATG ACTGCTTCAA ACCGGTCTCT CGCTATTGGG ATCGTATTAA TCGCCCTGAA 
CAACTGATGA GCGCGCTGAT TAATGCCATG CGCGTGCTGA CCGATCCGGC AGACACCGGT 
GCGGTAACGT TGTGTTTGCC GCAGGATGTA CAGGCGGAAG TCTGGGATTA TCCTGCATCG 
TTTTTCCGCA AGCGCGTCCA TCACCTCGAA CGACGTCCGC CAGATGCATC GCGTCTGGAT 
GACGCTGCGG CGTTGATTGC GAGAAAACGC TGTCCAATGC TGATTTGCGG TGGCGGCGTT 
CGTTATTCCG GTGCACATGA TGCTCTGGCA CAGTTTGCTG AGCAGTTTGC GATTCCGTTT 
GGTGAAACGC AGGCGGGCAA GGGCGCGATT ATCTCATCGC ACCCGCTGAA CTGTGGCGGT 
ATTGGCGTCA CGGGTGGGCT GGCGGCGAAT CGGCTCGCGC AAGAGGCCGA TTTGATTATC 
GGCGTTGGGA CGCGTTTAAC CGATTTCACC ACCGGTTCCA AGTCGCTGTT TCAGAACCCG 
AACGTCGAAT TTTTACTGCT CAACGTTGCC GAATTTGATG CGCTAAAACT GGATGCGCAA 
CCCCTGATCG CCGATGCCCG TGTTGGGCTG GAAGCGTTGA GTGAACGGCT GGCAACGGTG 
TCGTATCGTA GCGGCTGGCA GCAGGCTATC GAACAGGCGC GTGCGGAATG GGACCAAGAG 
TTACAGCGGT TGTTTACCGT GCAAGATCAG GGGGAACTGG TGCCGGAAGT GGTGGATGGT 
CTGGAAGACA AGCTGGATGA ATACCGCCAG ATGCTGAATA CCCATCTGAC GCAAACGCGG 
GTGCTTGGCA TACTGAATGA GGAACTGGAG GATAACGCGA TTGTGGTTGG TGCGGCGGGC 
TCACTGCCGG GCGATCTACA GCGTGTGTGG CAGGTGAAAA CGCCAGACAG CTATCATCTG 
GAATATGGTT ACTCCTGCAT GGGATATGAG ATTGCGGCGG CGATTGGCGC ACGCCTTGCA 
GCACCGCGGC AGCCGGTCTA CGCGATGGTC GGCGACGGTT CTTATTTGAT GCTTCACACG 
GAACTGCAAA CGGCGGTACA GGAGGGCATC AAAATCACGG TACTGCTGTT CGACAACGCA 
GGTTTTGGCT GTATCAATAA TCTGCAAATG AGTCAGGGTA TGGGCAGCTT CTGTACGGAA 
AACCGCTACC GCGATACGGA GTCGAGGCTA CTGTGCGGTG CGCTCATTCC GGTGGATTTC 
GCCAAGAATG CCGAAAGCTA CGGCTGCAAA GCGTGGCGGG TGCATGATGA AGCCTCGCTC 
AAGCTCGCTC TGGCTGAATC ACGCCAGCAC GCGGGACCAG TACTGCTCGA TATCAAGGTA 
CTGCCGAAGA CCATGACGCA CGGCTATGAA TCCTGGTGGC GCACGGGAAC GGCGCAAGTT 
GCCGACAACC CAGAGATTGA ATCTGCGGCC AATAGTGTGA AAGCTGGGCT TTCCCGCGCA 
CGGCAGTACT AG 

 

Protein sequence

MDTCRITMAQ ALVRFLNQQY ISVDGEETPF VQGVMTIFGH GNVLGIGQAL EQEANCLTVH 
QGCSEQGMAH IAVGFAKQHK RRKIYAVTSS VGPGAANMVT AAATATANRI PVLLLPGDLF 
ACRQPDPVLQ QVEQYHDLSI STNDCFKPVS RYWDRINRPE QLMSALINAM RVLTDPADTG 
AVTLCLPQDV QAEVWDYPAS FFRKRVHHLE RRPPDASRLD DAAALIARKR CPMLICGGGV 
RYSGAHDALA QFAEQFAIPF GETQAGKGAI ISSHPLNCGG IGVTGGLAAN RLAQEADLII 
GVGTRLTDFT TGSKSLFQNP NVEFLLLNVA EFDALKLDAQ PLIADARVGL EALSERLATV 
SYRSGWQQAI EQARAEWDQE LQRLFTVQDQ GELVPEVVDG LEDKLDEYRQ MLNTHLTQTR 
VLGILNEELE DNAIVVGAAG SLPGDLQRVW QVKTPDSYHL EYGYSCMGYE IAAAIGARLA 
APRQPVYAMV GDGSYLMLHT ELQTAVQEGI KITVLLFDNA GFGCINNLQM SQGMGSFCTE 
NRYRDTESRL LCGALIPVDF AKNAESYGCK AWRVHDEASL KLALAESRQH AGPVLLDIKV 
LPKTMTHGYE SWWRTGTAQV ADNPEIESAA NSVKAGLSRA RQY