| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_2875 |
|---|
| Symbol | |
|---|
| ID | 8531281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 3135583 |
|---|
| End bp | 3136464 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | threonine and homoserine efflux system |
|---|
| Protein accession | YP_003260233 |
|---|
| Protein GI | 261822127 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00290146 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTAT TTTCCCACCG TTTGCCATCA TTCATCCCTG TATTGCTCAT CATTATCTCG
ATGCTGTCTA TCCAAAGCGG GGCTGCTCTG GCCAAAAATC TGTTTCCGCT CATCGGTGCC
ACTGGCGTTA CGGCATTGCG TCTGGGAATT GGGACGATCA TTCTGTGCAT CATTTTCAAA
CCGTGGCGTA TGCGCTTCAG TAGTAACCGC CTGCCGCTGT TGATTTATGG TATTACGCTG
GGCGGTATGA ATTTTCTGTT CTATCTCTCA TTGCAGACGG TGCCGCTTGG CATTGCTGTC
GCACTGGAAT TCACCGGTCC ACTTGCCGTT GCTATGTTAG CTTCACGCAG GCCGATTGAT
TTTCTATGGG TTTTTCTTGC CGTTGCCGGT TTGTGGTTTT TATTACCGCT GGGTCATAAC
ATCGGAAATG TTGATTTAAC GGGCGCAGCC TACGCCATCG GTGCAGGCAC CTGCTGGGCG
TTCTATATTC TATTTGGGCA AAAAGCAGGG GCAAATCACG GACCAGGAAC TGTCGCTATT
GGCTCCTGTA TTGCTGCACT GATCTTCTGC CCTATCGGTG CATATTACGC GGAAAGCACG
CTGTTTTCGC TCACGATACT CCCGCTCGGC ATTGCTGTTG CGATCCTATC CACCGCGCTG
CCCTATTCTC TGGAAATGGT GGCGTTAACA CGTCTACCCG CCAGAACGTT CAGTACCTTA
ATGAGTATGG AACCGGCAAT TGCCGCCTTA TCAGGGATAC TCTTCCTCGG CGAACACCTC
TCGTTCATAC AGTGGATGGC GCTGATATTT ATTATCACCG CATCACTAGG CGCAACGTTG
ACAATAAAAT CAGCAGAGGT ACGTAAAGAA GAGAAGACGT AA
|
|---|
| Protein sequence | MTLFSHRLPS FIPVLLIIIS MLSIQSGAAL AKNLFPLIGA TGVTALRLGI GTIILCIIFK
PWRMRFSSNR LPLLIYGITL GGMNFLFYLS LQTVPLGIAV ALEFTGPLAV AMLASRRPID
FLWVFLAVAG LWFLLPLGHN IGNVDLTGAA YAIGAGTCWA FYILFGQKAG ANHGPGTVAI
GSCIAALIFC PIGAYYAEST LFSLTILPLG IAVAILSTAL PYSLEMVALT RLPARTFSTL
MSMEPAIAAL SGILFLGEHL SFIQWMALIF IITASLGATL TIKSAEVRKE EKT
|
|---|
| |