Gene Pecwa_2786 details

Gene Information

• Locus tag: Pecwa_2786
• ID: 8531190
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: +
• Start bp: 3048459
• End bp: 3051911
• Gene Length: 3453 bp
• Protein Length: 1150 aa
• Translation table: 11
• GC content: 56%
• Product: transcription-repair coupling factor
• Protein accession: YP_003260146
• Protein GI: 261822040

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.974454
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGCCTG AAAATTACCG TTATTCGTTG CCACCCAAAG CGGGCGAACA GCGCCTGTTG 
GGCGAGTTAA CCGGCGCGGC CTGCGCCGTT GAATGTGCAG AGATCGTTGA ACGCCACGCC 
GGGCTGGTGG TGCTTATCGC GCCCGATATG CAAAACGCCC TGCGATTGCG TGATGAAATT 
CAGCAATTTA CCGACCAGCA CGTCACCACG CTGCCTGACT GGGAAACGCT GCCCTACGAT 
AGCTTTTCTC CGCATCAGGA AATTATTTCA ACTCGCCTTT CCACGCTCTA TCAATTGCCC 
AACATGACAC GCGGCGTTCT GATTCTGCCG GTCAACACGC TGATGCAACG CGTTTGTCCG 
CACAGTTTCC TGCACGGCCA CGCGCTGGTG TTGAAAAAAA GCCAGCGCCT CTCGCGCGAT 
AAGCTGCGTT CGCAGTTGGA ACAAGCGGGC TACCGTAGTG TCGATCAGGT GATGGAGCAC 
GGCGAATATG CGACGCGCGG CGCGCTGCTG GATCTATTCC CAATGGGGAG TGAAGAGCCC 
TATCGCATCG ATTTCTTTGA TGACGAGATC GACAGCCTGC GCTTGTTTGA TGTGGACACG 
CAGCGAACGC TGAATGAAGT ACCACACATC AATCTGCTGC CCGCGCATGA ATTCCCGACC 
GACAAAACTG CAATCGAGCT TTTCCGCAGC CAGTGGCGTG AACAGTTCGA GGTACGACGC 
GATGCCGAGC ACATTTATCA ACAGGTCAGC AAAGGCGTCT GGCCCGCAGG GATCGAATAC 
TGGCAGCCAC TATTCTTCAG TGAGCCGCTG CCGTCGCTAT TCAGTTACTT CCCGAACAAC 
ACGCTGATCG TCAACACGGG TAATATTGAA CAGAGCGCTG AGCGCTTCTG GCAGGATATT 
CAGCAGCGCT TTGAAAGTCG CCGTGTCGAC CCCATGCGCC CGCTGTTGTC GTCGGATTCC 
CTCTGGCTAC GCGTCGATGG GTTGTTCACC GAGCTGAAAG CGTGGCCACG CGTACAGTTA 
AGAACCGATA CGTTGCCGGA AAAAGCCGCC AACGTAAATC TGGCCTATCT GCCGCTGCCG 
GATCTGGCGG TTCAACACCA GCAGAAATCG CCGCTGGATG CACTACGCCG TTTTATCGAA 
CAGTTCGACG GCCAGATCGT TTTCTCTGTT GAGAGCGAAG GTCGCCGCGA AACGCTACAA 
GAGCTGCTGG CTCGCATCAA GCTGAACCCT AAGCTCATCA ACACGCTAGA GCAGGCACAG 
GGACGTGGCA CTTATCTGAT CATTGGTGCC AGCGAACACG GCTTTATCGA CACCCTGCGC 
CAGCGCGCCT TAATCTGCGA AAGCGATCTG CTGGGTGAAC GCGTCAGCCG TCGCCGTCAG 
GATAGTCGCC GCACGATTAA TACCGATACG CTGATCCGCA ATCTGGCAGA ACTGCGTCCG 
GGGCAGCCAG TCGTTCACCT CGAACACGGC GTTGGCCGCT ATGTGGGGCT AACCACGCTG 
GAAGCCGGTG GCATCAAAGC CGAGTACCTG ATTTTGACCT ATGCGGGTGA AGACAAGCTG 
TACGTCCCGG TTTCTTCGCT GCACTTGATT AGCCGCTACG CGGGCGGTGC CGATGAGAAT 
GCACCGCTGC ACAAATTGGG TGGCGAGGCG TGGTCGCGTG CGCGGCAAAA AGCGGCGGAA 
AGAGTGCGTG ATGTCGCCGC CGAGCTACTG GATATTTATG CCCAGCGCGC GGCGAAGAGC 
GGCTTTGCCT TTAAGCATGA CAAAACGCAG TACCAGCTTT TCTGCGAAAG TTTCCCTTTC 
GAAACTACGC CCGATCAGGC CCAGGCCATC AACGCCGTGC TGAGCGACAT GTGCCAGCCG 
CTGGCGATGG ATCGTTTGGT GTGTGGCGAT GTCGGCTTTG GTAAAACCGA AGTGGCAATG 
CGCGCCGCGT TTTTAGCGGT TGAAAACCAT AAGCAGGTTG CCGTTCTGGT GCCGACGACG 
CTGTTAGCGC AGCAGCATTT TGACAACTTC CGCGATCGCT TTGCCAACTG GCCGGTGAAG 
ATTGAGATGA TCTCCCGCTT CCGCAGCGCG CGTGAACAAA CCCAGATTCT TGAGGAAACG 
CAGGAAGGCA AAGTCGATAT TCTGATCGGC ACCCACAAAT TGTTACAGAG CGACGTGCGC 
TGGCGCGATT TAGGGCTGCT GATTGTCGAC GAAGAACACC GCTTCGGCGT GCGTCACAAA 
GAGCGCATCA AAGCGATGCG AGCGGATGTT GATATCCTGA CGCTGACCGC TACACCGATT 
CCACGAACGC TCAACATGGC AATGAGCGGC ATGCGCGATC TGTCGATTAT TGCCACGCCC 
CCCGCCCGTC GTCTGGCGGT GAAAACGTTC GTGCGAGAAT ATGACAATCT GATGGTGCGT 
GAAGCCATTC TGCGTGAAAC GCTGCGCGGT GGGCAGGTGT ACTACCTCTA TAACGACGTC 
GAAAATATCG AGAAAGCCAC TCAACGGTTG GCGGAACTGG TGCCAGAAGC ACGCATTACT 
ATCGGCCACG GCCAGATGCG TGAACGTGAG TTGGAACGGG TGATGAACGA CTTCCATCAC 
CAGCGTTTTA ACGTGCTGGT ATGTACCACC ATCATCGAAA CCGGGATCGA CATACCGAGC 
GCCAACACCA TCATCATTGA GCGCGCCGAT CACTTCGGTC TGGCACAGTT GCACCAACTG 
CGTGGTCGCG TGGGGCGTTC TCACCATCAG GCTTATGCCT ATCTGCTGAC GCCGCCTCCT 
AAAGCGATGA GCACCGACGC ACAGAAACGT CTGGAAGCGA TCGCCTCATT GGAAGACCTC 
GGTGCAGGCT TTGCGCTGGC AACGCACGAT CTGGAAATTC GCGGCGCGGG CGAACTGCTC 
GGGGACGATC AGAGCGGACA GATGACCAGC GTCGGTTTCT CACTGTACAT GGAACTGTTG 
GAAAGCGCCG TAGACGCTCT GAAAGCCGGT CGGGAGCCGT CACTGGAAGA TCTGATCAAT 
AGCCAGACCG ACGTCGAGCT ACGGTTGCCC GCCCTGCTGC CCGACGATTT CATCCCCGAC 
GTCAATACGC GCCTGTCGCT ATACAAACGA ATTGCCAGTG CGAAAAATAC TGTCGAACTG 
GATGAGCTGA AAGTAGAGCT GATCGATCGC TTCGGCCTCC TTCCTGATGC AAGCCGACAT 
CTGTTGCAGA TCGCCGCCTT GCGCCAGCAG GCGCAAGCGT TGGGTATCCG CCGTATTGAA 
GGCAATGAGA AAGGCGGTTT CATCGAATTC GGCGAGCAAA ATCGCGTCGA TCCGTCTCAT 
CTCATCGGCC TGTTGCAGCG CGATCCGGGC ACCTATCGTC TGGATGGTCC GACTCGCCTG 
AAATTTATGA AGGATTTAAG TGACCGTCCA CAGCGCATCG AGTTTGTCGG TACACTGCTG 
GGGAACATGG CACAGCATAC GCTAGCAGCC TAA 

 

Protein sequence

MMPENYRYSL PPKAGEQRLL GELTGAACAV ECAEIVERHA GLVVLIAPDM QNALRLRDEI 
QQFTDQHVTT LPDWETLPYD SFSPHQEIIS TRLSTLYQLP NMTRGVLILP VNTLMQRVCP 
HSFLHGHALV LKKSQRLSRD KLRSQLEQAG YRSVDQVMEH GEYATRGALL DLFPMGSEEP 
YRIDFFDDEI DSLRLFDVDT QRTLNEVPHI NLLPAHEFPT DKTAIELFRS QWREQFEVRR 
DAEHIYQQVS KGVWPAGIEY WQPLFFSEPL PSLFSYFPNN TLIVNTGNIE QSAERFWQDI 
QQRFESRRVD PMRPLLSSDS LWLRVDGLFT ELKAWPRVQL RTDTLPEKAA NVNLAYLPLP 
DLAVQHQQKS PLDALRRFIE QFDGQIVFSV ESEGRRETLQ ELLARIKLNP KLINTLEQAQ 
GRGTYLIIGA SEHGFIDTLR QRALICESDL LGERVSRRRQ DSRRTINTDT LIRNLAELRP 
GQPVVHLEHG VGRYVGLTTL EAGGIKAEYL ILTYAGEDKL YVPVSSLHLI SRYAGGADEN 
APLHKLGGEA WSRARQKAAE RVRDVAAELL DIYAQRAAKS GFAFKHDKTQ YQLFCESFPF 
ETTPDQAQAI NAVLSDMCQP LAMDRLVCGD VGFGKTEVAM RAAFLAVENH KQVAVLVPTT 
LLAQQHFDNF RDRFANWPVK IEMISRFRSA REQTQILEET QEGKVDILIG THKLLQSDVR 
WRDLGLLIVD EEHRFGVRHK ERIKAMRADV DILTLTATPI PRTLNMAMSG MRDLSIIATP 
PARRLAVKTF VREYDNLMVR EAILRETLRG GQVYYLYNDV ENIEKATQRL AELVPEARIT 
IGHGQMRERE LERVMNDFHH QRFNVLVCTT IIETGIDIPS ANTIIIERAD HFGLAQLHQL 
RGRVGRSHHQ AYAYLLTPPP KAMSTDAQKR LEAIASLEDL GAGFALATHD LEIRGAGELL 
GDDQSGQMTS VGFSLYMELL ESAVDALKAG REPSLEDLIN SQTDVELRLP ALLPDDFIPD 
VNTRLSLYKR IASAKNTVEL DELKVELIDR FGLLPDASRH LLQIAALRQQ AQALGIRRIE 
GNEKGGFIEF GEQNRVDPSH LIGLLQRDPG TYRLDGPTRL KFMKDLSDRP QRIEFVGTLL 
GNMAQHTLAA