| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_2587 |
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| Symbol | |
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| ID | 8530988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium wasabiae WPP163 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013421 |
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| Strand | - |
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| Start bp | 2825239 |
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| End bp | 2829126 |
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| Gene Length | 3888 bp |
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| Protein Length | 1295 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | |
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| Product | ATP-dependent RNA helicase HrpA |
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| Protein accession | YP_003259953 |
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| Protein GI | 261821847 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAATCAC CTCTCAGTGC ATTATCTACG CAGTTAAGTG AGCTAATGCT TCGCGATCGG
CAACGTTTGC GCCGTCGTTT GCAGGGCGCA GCGAAGGTCA GCAGCCCGCA GGCTCAGGCC
GCGATCGCTC AGGAAATTGA GGGGGAGATT GTTGCGGCGC GCCAGAAAGT CGAGAATCGG
CGGGCAAGCT GCCCGACAAT TCACTACCCT GAGCAGTTGC CCGTTAGTCA GAAAAAAGAC
GAGATACTGG AGGCGCTGCG TCATCATCAG GTGATTATTG TCGCAGGTGA AACGGGTTCG
GGTAAGACCA CGCAGTTGCC GAAAATCTGT CTCGAACTGG GGCGTGGCGT GCATGGTCTG
ATTGGCCACA CGCAGCCACG CCGTCTGGCA GCCAGAACCG TCGCCGACCG TATTGCCGCA
GAGTTGGAAA CGCCGCTGGG TGGCAGCGTC GGGTATAAAG TCCGTTTTAA CGATCAGGTC
GGTGACAATA CGCTGGTCAA ACTGATGACC GACGGTATTC TACTGGCGGA AATTCAGCAG
GATCGCCTGT TGATGCAATA TGACACGCTG ATCATCGATG AAGCGCATGA ACGCAGCCTG
AATATCGATT TTATCATGGG CTATTTGCGC CAACTACTGC CAAAACGCCC TGATTTAAAA
GTGATTATCA CATCGGCTAC CATCGATCCG CAGCGCTTCT CGCGCCATTT TAATCATGCG
CCAATCATTG AAGTCTCGGG CAGGACGTAT CCGGTGGATG TGCGTTACCG TCCCGTGGTG
GAAGACGCTG ATGACAGCGA GCGCGATCAG CTACAGGCGA TTTTTGATGC CGTTGATGAA
CTGACACGCG AAGGGCCGGG TGACATACTG GTCTTCATGA GCGGTGAACG TGAAATCCGC
GATACGGCAG AGGCGTTGAC CCGCCTGGAT TTGCCGCATA CCGAAATTTT ACCGCTGTAT
GCACGTTTGT CGAATCAGGA ACAAAACCGT GTCTTTCAGT CACATCATGG TCGCCGCATT
GTGCTGGCGA CCAACGTGGC GGAAACGTCA CTTACCGTGC CGGGCATTCG CTATGTGATC
GATCCGGGTA CTGCGCGTAT CAGCCGCTAT AGCTTCCGCA CCAAGGTACA ACGGCTACCG
ATTGAACCGG TCTCGCAGGC GTCGGCGAAT CAGCGTAAAG GGCGCTGTGG CCGTGTTGCC
GCCGGGGTGT GTATTCGCCT CTATTCCGAG CAGGATTTCC TCTCTCGACC TGAATTTACC
GACCCTGAAA TTCTTCGCAC CAATCTGGCT TCCGTCATTC TGCAAATGAC ATCGCTGGGG
TTAGGGGATA TCGCCGCGTT CCCGTTTGTT GAAGCGCCAG ATAAGCGCAA CATTCAGGAC
GGCGTGCGCT TGCTGGAGGA ACTGGGGGCA ATTCATCTGG CGGAGAACGG GCATTACCAT
CTAACGCCGC AAGGGCAACA GTTGGCGCAA TTACCGATTG ATCCACGTTT GGCGCGTATG
GTGCTGGAAG CGCGTAAAAT GGGCTGTGTG CGTGAGGTGA TGGTAATTAC TGCCGCGCTG
TCGATTCAGG ACCCGCGCGA AAGGCCGATG GATAAGAAGC AGGCGTCAGA TGAAAAACAC
CGTCGCTTTG CCGATAAAGA CTCTGATTTT CTGGCCTTCG TCAATCTGTG GGACTATCTG
CGTGAGCAGC AGAAAGCGCT GTCTTCCAGC CAGTTCCGCC GTCAGTGTCG TACCGATTTT
CTTAACTACT TGCGCGTTCG TGAATGGCAG GATATCTACA CGCAACTGCG TCAGGTGGTG
AAAGAGTTGG GGTTACCGGT CAACAGCGAA CCGGCTGATT ATCTGAGTAT TCACTGCTCG
CTGCTCACTG GCTTGTTGTC GCATATCGGA CAGAAAGACA TTGAGAAACA AGAATTCAGC
GGTGCGCGTA ACGCCCGGTT TGCTATTTTT CCAGGCTCCG GGTTATTCAA AAAACCGCCT
AAATGGACGA TGGTGGCTGA GCTGGTGGAG ACCAGCCGCT TATGGGGGCG CATCGCCGCG
CGCATTGAAC CCGAGTGGAT CGAACCGCTG GCTCCGCATC TGATTAAACG GAGCTACAGC
GATCCTCACT GGGAGAAAGC GCAGGGTACG GTGATGGCGC AGGAGAAGGT GACGCTCTTC
GGGCTGCCGA TTGTTGCGGC GCGTAAGGTG AACTACAGCT CAATCGATCC GACGCTGGCG
CGAGAGATGT TCATCCGCCA TGCGCTGGTG GAAGGCGATT GGCAAACGCA TCACGCTTTT
TTCCGCGCCA ACCTCAAGTT GCTGGCGGAG GTGGAGGATT TAGAGCATAA ATCGCGCCGC
CGCGACATTT TGGTGGACGA TGAAACGCTG TTTGCGTTTT ACGATCGACG TTTGCCGCAT
GACGTTGTGT CGTCACGCCA TTTTGACAAA TGGTGGAAAG GTGCCAGCCG CGACAACGCC
GACCTGCTTA ATTTCGAAAA AAGCATGTTG ATTAAAGACG GTGCGGAAAA GGTGAGTGCG
CTGGATTACC CGAATTTCTG GCATCAGGAC AACTTGAAAT TACGCTTGTC CTATCAGTTT
GAGCCGGGCA CGGATGCGGA TGGCGTAACG GTACACATTC CGCTGCCTAT TCTCAATCAG
GTTCGGGAAG AAGGCTTCGA GTGGCAAATT CCCGGCGTGC GTCGCGAACT GGCGATTGCG
CTGATTAAAT CGTTGCCTAA GCCGTTACGC CGTAACTTTG TTCCTGCGCC GAACTATGCA
GAGGCCTTTC TGGCGCGTAC CACGCCTTTG GAGAAAGGGT TATTGGATGC GCTGGAGCGT
GAACTTCGGC TGATGACGGG CGTCACGGTG CCGCGTGAGG CGTGGCAGTG GGATCAGGTT
CCCGATCATC TGAAAATCAC GTTCCGCGTT ATTGATGAGA AAAATCGGAC GCAGCGAGAA
GGTAAAGAGC TGAGCGCGCT GAAAGATCAG CTCAAGGATA AAGTGCAACA AACGCTGTCA
TCCGTGGTGG ATGACGGGCT GGAGCAGCGT GGCCTGCACG TCTGGAGCTT CGGCTCGCTG
CCGGATTGTT ATGAGCAGAA ACGAGGCGGC TACTCGGTCA AAGCCTACCC TGCGTTGGTG
GATGAAAAAG ACAGCGTGGC GATCCGCCTG TTTGACACAC CACACCAGCA GCAGCAGGTC
ATGCGACACG GATTGCGCCG TCTGTTGTTA TTAAATATTC CTTCGCCGAT CAAATACCTA
CACGAAAAAC TGCCGAACAA GGCGAAACTC GGCCTCTATT TCAACCCGTA TGGTAAGGTG
TTGGATCTCA TCGATGACTG TATCGCCTGC GCGGTAGACA AACTGATTGA ATCATCCGGC
GGCCCAGTCT GGCAGGAAGA CGCATTCCAG CAGTTGCATG AAAAAGTACG TGCAGAGCTG
AACGAGACGG TGGTGGATAT CGCCAAACAG GTTGAGCAAA TCTTGACGGC GGTGTTCGCC
ATCAACAAGC GTCTGAAAGG GCGTGTAGAC ATGGCAATGG CGCTGGCATT AAGTGATATC
AAAAGCCAGT TGAGCGGTCT GGTGTTCCGT GGTTTTGTGA CCCAGAACGG TTGGCAACGT
CTGCCGGACG TGCTGCGTTA TCTGCATGCG ATAGAACGCC GTCTGGAGAA GCTGGCGCAG
GATGTCCACC GTGACAGGGC GCAGATGCTG AAAGTTGAAC AGGTTCAACA GGCATGGCAG
CAGTGGTCGA ATAAGTTGCC TACGGAACGA CGTGACGATG ACGACGTGAA GGCAGTACGC
TGGATGCTGG AAGAGCTGCG CGTCAGTTAC TTTGCTCAAC AGCTAGGGAC ACCGTTCCCG
ATCTCGGATA AGCGCGTATT GCAGGCGATG GAGCAGGTTG AAGGGTAA
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| Protein sequence | MKSPLSALST QLSELMLRDR QRLRRRLQGA AKVSSPQAQA AIAQEIEGEI VAARQKVENR
RASCPTIHYP EQLPVSQKKD EILEALRHHQ VIIVAGETGS GKTTQLPKIC LELGRGVHGL
IGHTQPRRLA ARTVADRIAA ELETPLGGSV GYKVRFNDQV GDNTLVKLMT DGILLAEIQQ
DRLLMQYDTL IIDEAHERSL NIDFIMGYLR QLLPKRPDLK VIITSATIDP QRFSRHFNHA
PIIEVSGRTY PVDVRYRPVV EDADDSERDQ LQAIFDAVDE LTREGPGDIL VFMSGEREIR
DTAEALTRLD LPHTEILPLY ARLSNQEQNR VFQSHHGRRI VLATNVAETS LTVPGIRYVI
DPGTARISRY SFRTKVQRLP IEPVSQASAN QRKGRCGRVA AGVCIRLYSE QDFLSRPEFT
DPEILRTNLA SVILQMTSLG LGDIAAFPFV EAPDKRNIQD GVRLLEELGA IHLAENGHYH
LTPQGQQLAQ LPIDPRLARM VLEARKMGCV REVMVITAAL SIQDPRERPM DKKQASDEKH
RRFADKDSDF LAFVNLWDYL REQQKALSSS QFRRQCRTDF LNYLRVREWQ DIYTQLRQVV
KELGLPVNSE PADYLSIHCS LLTGLLSHIG QKDIEKQEFS GARNARFAIF PGSGLFKKPP
KWTMVAELVE TSRLWGRIAA RIEPEWIEPL APHLIKRSYS DPHWEKAQGT VMAQEKVTLF
GLPIVAARKV NYSSIDPTLA REMFIRHALV EGDWQTHHAF FRANLKLLAE VEDLEHKSRR
RDILVDDETL FAFYDRRLPH DVVSSRHFDK WWKGASRDNA DLLNFEKSML IKDGAEKVSA
LDYPNFWHQD NLKLRLSYQF EPGTDADGVT VHIPLPILNQ VREEGFEWQI PGVRRELAIA
LIKSLPKPLR RNFVPAPNYA EAFLARTTPL EKGLLDALER ELRLMTGVTV PREAWQWDQV
PDHLKITFRV IDEKNRTQRE GKELSALKDQ LKDKVQQTLS SVVDDGLEQR GLHVWSFGSL
PDCYEQKRGG YSVKAYPALV DEKDSVAIRL FDTPHQQQQV MRHGLRRLLL LNIPSPIKYL
HEKLPNKAKL GLYFNPYGKV LDLIDDCIAC AVDKLIESSG GPVWQEDAFQ QLHEKVRAEL
NETVVDIAKQ VEQILTAVFA INKRLKGRVD MAMALALSDI KSQLSGLVFR GFVTQNGWQR
LPDVLRYLHA IERRLEKLAQ DVHRDRAQML KVEQVQQAWQ QWSNKLPTER RDDDDVKAVR
WMLEELRVSY FAQQLGTPFP ISDKRVLQAM EQVEG
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