| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_2560 |
|---|
| Symbol | |
|---|
| ID | 8530961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 2793273 |
|---|
| End bp | 2794145 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | |
|---|
| Product | protein of unknown function DUF6 transmembrane |
|---|
| Protein accession | YP_003259927 |
|---|
| Protein GI | 261821821 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.711408 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCA CATCTTCACC ACACTACTGG CGTGACGTCA TACTCACAGC GTTGGCCCCC
GCGATTTGGG GCTCCACTTA TATTATTACA ACGGAATTCC TGCCACCAGA CCGGCCCTTC
ACCGCGGCAC TTATCCGCGT GCTACCTGCG GGCCTGCTGC TGCTTTTATT CACCCGACGC
TTTCCCGCCC GGCAAGACTG GTGGCGCGTA GTCGTGCTCA GCGCCCTGAA TATCGGTGTT
TTTCAAGCGC TGCTGTTTGT TGCCGCTTAT CGTTTACCAG GCGGATTAGC GGCGGTACTT
AGCGCGATCC AGCCGCTGTT GATCATGGTA TTAGTCTGGG CCGTGGATCA TCGAACACCC
AGACAGGCCA CGCTGTGGTC GGCGGTCATC GGCGTGATTG GCATGGCCAC GTTGCTGCTG
TCGCCACAGA CGACATTTGA ACCGGTGGGA ATCGCCGCCG CGCTGCTGGG TGCGATGTGC
ATGGCGATGG GCGTCTGGTT GACACGTCGC TGGCAGCTTG ATCTGCCTGT GCTGCCGCTT
ACCGGCTGGC AACTTTTCAT CGGCGGATTA ATGCTGGCAC CCGTTGCGTG GCTAGCCGAT
GCCCCACTGC CTGCGTTGAC CCTGTCACAG TGGGCCGCTT ACGCCTATCT CTGCCTTGCG
GGTGCCGTGC TCGCATATGG ACTCTGGTTT CGTGGCGTGA CGCGTCTGCC GACGGTTGCC
GTTGCATCAT TGGGGTTGTT GAGTCCGCTT ACCGCCGTGG TGCTAGGTTG GGCGTTGCTT
TCCCAGTCGA TCACTGGCAC AGCGTTCTTA GGTTTGGCGA TCGTGCTCGC CAGCGTCTTC
GCCGTGCAAT GGACGACGTC GCGAAGCAAA TAA
|
|---|
| Protein sequence | MDTTSSPHYW RDVILTALAP AIWGSTYIIT TEFLPPDRPF TAALIRVLPA GLLLLLFTRR
FPARQDWWRV VVLSALNIGV FQALLFVAAY RLPGGLAAVL SAIQPLLIMV LVWAVDHRTP
RQATLWSAVI GVIGMATLLL SPQTTFEPVG IAAALLGAMC MAMGVWLTRR WQLDLPVLPL
TGWQLFIGGL MLAPVAWLAD APLPALTLSQ WAAYAYLCLA GAVLAYGLWF RGVTRLPTVA
VASLGLLSPL TAVVLGWALL SQSITGTAFL GLAIVLASVF AVQWTTSRSK
|
|---|
| |