| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_2546 |
|---|
| Symbol | |
|---|
| ID | 8530947 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 2776091 |
|---|
| End bp | 2777584 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, GntR family with aminotransferase domain protein |
|---|
| Protein accession | YP_003259913 |
|---|
| Protein GI | 261821807 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.474867 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGCTCAC TGCTAACCGA CTTATTGCTT CAGCGTTTAG CCAACCAGCA GGATGGTGCG
TTGAACAAGC GTTTGTACGA CAGCATCCGA CAGGCAATTC TCGATGGGGC CATTACCGCT
GGCGAGCGAC TCCCGTCGTC ACGCGATCTG GCGCAGCAGT TGGCACTGTC ACGCAATACG
GTGCTGACGG CCTACGAACA ACTCCTGGCG GAAGGCTATA TTGAAGCACG CAAAGGAAGT
GGAACCTTCG TCACGGAACA GTTACCTGAT GGCAATATGC TGCCAGTGAA CAGCAGTAAT
GCGGGGGAAA TACGAGAGCC TAAACATGAG CTTTCGCGTC GCGGTATGCA TCTGCTGGGT
TATGCCGGGG CGTCCATTCG CCAATGGGGG GCATTTATGC CCGGCATCCC CGATATCGCC
AGCTTCCCAC ATGATTTATG GCGGCGTATT CAGACGCGCC TGACACGACG CGTTCGTCCT
GAACAACTGT CCTATTCGCC AATTGGCGGC TGTCCCGAAC TCCAGTTGGC GCTGGTGGAT
TACCTGCGCG TCGCCCGTTC CGTCGAGTGT ACGCCGGAAC AGGTTTTGAT TACCGAAGGC
ACCCATCAGG CAATGGACCT GCTGGCTAAA ATGCTATGTA ACCCCGGCGA TTTGGCGTGG
ATTGAAGATC CCTGCTACTG GGGGATTCGT AATGTCCTGA CGATTAACGG CCTGCGCGTT
GCTCCTATTG ATGTCGATGA ACAGGGTCTG GCACCACCGG AAACGCTTGC ACCCGACGCT
GCGCCGCGCC TGATTTGCGT GACACCGTCA CATCAATACC CACTGGGTGC GGTGATGAGT
TTGGCACGCC GCCAACGGTT GCTGGCACTG GCGCAAGAGC ATGGTTGCTG GGTGGTGGAA
GACGATTATG ACAGTGAATT CCGCTTTTCC GGCAGCCCGA TCCCCGCACT GCAAGGACTC
CAGACGCAAT CTCCAGTGAT CTACATCGGC ACATTCAGTA AAACGCTCTA CCCCGGCCTG
CGCGTCAGTT ACATGGTACT GCCGCCGCTG CTGGCGCAGT CGCTGAAGAC GGCGCATTCC
GAACTCTATC GCGGCGGACA CTGGCTAACA CAGGCTACGC TCGCGCAGTT TATCCGCGAA
GGCCACTACG CCGCGCATAT CCGCCGCATG CGTTTGCTGT ATGCCAAACG GCGTGCGTTA
TTAACATCAC TGATCGAACA GCATCTGGGC GCGGATTACG TCGGGGATAG CAGTAATGCC
GGGCTACATA TGCTGCTCAG CCTACCTCCC CACGTTGATG ATGTCGTGCT GAGCGCGGCG
ATCCTGCGCC GTGGTGTGAT GGTCAAACCG CTTTCCAGTT ACTATCTGCA ACCGACGCAG
CAGCGCGGTT TATTGCTAGG CTACGCCAGC GTCGAAGAAC CCCAAATGGA GCAGGCTTTT
TCCGTGATTG TGGCATGTAT TCAGGCGCTG GGTACCCATC ATTCGGGCGT CTGA
|
|---|
| Protein sequence | MRSLLTDLLL QRLANQQDGA LNKRLYDSIR QAILDGAITA GERLPSSRDL AQQLALSRNT
VLTAYEQLLA EGYIEARKGS GTFVTEQLPD GNMLPVNSSN AGEIREPKHE LSRRGMHLLG
YAGASIRQWG AFMPGIPDIA SFPHDLWRRI QTRLTRRVRP EQLSYSPIGG CPELQLALVD
YLRVARSVEC TPEQVLITEG THQAMDLLAK MLCNPGDLAW IEDPCYWGIR NVLTINGLRV
APIDVDEQGL APPETLAPDA APRLICVTPS HQYPLGAVMS LARRQRLLAL AQEHGCWVVE
DDYDSEFRFS GSPIPALQGL QTQSPVIYIG TFSKTLYPGL RVSYMVLPPL LAQSLKTAHS
ELYRGGHWLT QATLAQFIRE GHYAAHIRRM RLLYAKRRAL LTSLIEQHLG ADYVGDSSNA
GLHMLLSLPP HVDDVVLSAA ILRRGVMVKP LSSYYLQPTQ QRGLLLGYAS VEEPQMEQAF
SVIVACIQAL GTHHSGV
|
|---|
| |