Gene Pecwa_2461 details

Gene Information

• Locus tag: Pecwa_2461
• ID: 8530862
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: -
• Start bp: 2665918
• End bp: 2666448
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 53%
• Product: type VI secretion protein, VC_A0107 family
• Protein accession: YP_003259829
• Protein GI: 261821723

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCATCAA CGAAATCCAG TGGGCAAAAG TTCATTGCCC GCAATCGCGC ACCTCGCGTT 
CAGATCGAAT ATGACGTGGA AATTTATGGC GCGGAACGCA AAATTCAGTT GCCGTTCGTC 
ATGGGGGTAT TGGCGGATCT GGTGGGCAAA CCGCTGGAGC CGCAGGTGGC CCTCGATGAA 
CGTAAATTCC TCGAAATCGA CATCGATAAC TTTGATGAGC GCATGAAAGC GTTGAAGCCG 
CGCGCTGCCT TTCAGGTGGA TAACACGTTG AACGGCGAAG GTAAATTGAA CATCGACCTG 
ACTTTCGAAA GCATGGACGA CTTCTCGCCT GACGCCATCG CGCGCAACGT TGAGCCGCTG 
AGCAAGCTGT TGGATGCACG TACCCAGTTG GCTAACCTAC TGACCTATAT GGACGGTAAA 
AACGGTGCGG AAGAACTGGT CGGTAAAATT TTGCAAGACC CCACGCTGCT GCAGGCGTTG 
ACGCATCTGC CGAAGCAGGA CGATGCCGCT GAAGGTAAGG AAGATCAATA A 

 

Protein sequence

MASTKSSGQK FIARNRAPRV QIEYDVEIYG AERKIQLPFV MGVLADLVGK PLEPQVALDE 
RKFLEIDIDN FDERMKALKP RAAFQVDNTL NGEGKLNIDL TFESMDDFSP DAIARNVEPL 
SKLLDARTQL ANLLTYMDGK NGAEELVGKI LQDPTLLQAL THLPKQDDAA EGKEDQ