| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_2451 |
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| Symbol | |
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| ID | 8530852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium wasabiae WPP163 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013421 |
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| Strand | - |
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| Start bp | 2655315 |
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| End bp | 2657189 |
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| Gene Length | 1875 bp |
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| Protein Length | 624 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | |
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| Product | type VI secretion protein, VC_A0110 family |
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| Protein accession | YP_003259819 |
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| Protein GI | 261821713 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00678774 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAGCA AACTGCTCGA TTACTACAAC CGTGAGCTCG CTTATTTGCA TGAAATGGGC
GCGGAGTTTG CCGCGCACTA TCCCAAAGTG GCAGGGCGTC TGGGCATGCG AGGGATCGAT
GTCGCCGACC CTTACGTTGA ACGAATGCTG GAAGGTTTTG CCTTCCTCAC TTCGCGTGTT
CAACTGAAAA TGGACGCTGA ATTTCCGCGT TTTTCGCAGC GTATGCTGGA AATGATCGCG
CCTGGTTACT TATCGCCAAC GCCGTCAATG GCCATTGCCA AACTGACGCC AGATACGCAA
AAAGGCGACA TCAGCAATGG TTTCCTCGTG CCACGCGGCA CCATGATGGA AAACCAAAAT
CTGAAAAAAA GCGGCGTCAC CTGTAGCTAC ACCACGGCAC ATGACGTGAT GCTGCAACCG
TTATGCATCA GCGATGTCTC GCTCGGCGGT GTACCGGCTG ATATCCCTTT GGGTGAACTA
AAACTGAGCG GCCTCGGTGC CGCCAGTGCA TTGCGGATCC GTATTGAATG TGAAGGTGTT
CCGTCGTTAG ACCAGCTTAA GCTGGATGAT GTAATACTGT ACCTGAGTGG CCCGGATATC
CAGGCGCTGA AGCTGTTGGA ATTATTGATG CAGCATCGTG TCGGCATCCT GTTGCAATCC
GTGGAAGAAA AGCCGCTGCG CCGGGTGTTA AGCGATGATG CGCTACAGCA GGAAGGGTTT
GCACCAGAGC AGGCGCTGCT GCCAGACGAC CTGCGTAACT TCGATGGCTA TCGCCTGTTG
CAGGAGTATT TTGCTTTTCC TGCCCGTTTC CAGTTCATCA GTTTAAGGCA GTTAGCGCCG
TTCATTCGCT GCTGTGGCAA CGCCCGAATC TTTGAAATTA TTATCTTGCT GGATAAAGCC
GACAGCGCAC TAGAGAGTGT GGTGGATGCC AGTCATCTGG CATTACATTG CACCCCCGTC
ATTAATCTGT TCCCGAAAAC CGCTGAACGT TTAAAGATCA GCGACAGCCA ACACGAGTAC
CACTTGGTGG TCGATAATAT CCGTCCACTG GATTATGAAG TGCATTCGGT TCAGCGACTA
TTTGCCACGG TGGAAGGGAA ACGAGAGGAG CAGATTTTCC GCTCTTTCTG GAGCACCTTC
AGTGGCGATG GCAGCGATTA CGGTGCCTAT TTTTCGCTGC GGCGCGAGCA GCGCACGCTG
TCCGAACAGG CGCAGCGCTG TGGCACACGC ACTGGCTACA TCGGTTCGGA AGTTTTCCTG
TCGCTGGTCG ATGAGCACCA TACGCCGTGG CGTGATGACC TGCGTTATCT ATCGGCAGAC
GTGATGTGTA CCAGTCGTGA TTTACCACTC ATGCTATTAC AGCAGGATCA GGGCAACTTC
GTGATGCCAG ATTCGATCCC GGTGGGGCCG TTGACGTTGT GCAAAGGCCC AACGCCACCG
CGTCCGGCGC TAGCAGAAGG CCTCTCATCC TGGCGGCTGA TTAGCCATCT GCAAATGAAT
TACCTCAGTC TGATGGACTG CGCCGGCGGT GAAGGCGCTG CAGCATTGCG CCAACTACTT
AGCCTGTACG CCAACTTAGC CGATGCGCCA GTGTCACGCC AAATAGAAGC CATCCGCCAT
TGCCAGCTCA GCACCGTCAA CCGCCGTGTA CCTGAACCGG GGCCCGTAGT GTTTGCACGG
GGTGTCAGCA TCACGCTGGA GGTCGATGAA CAGGCGTTTT CCGGTGCAAG CCCGTGGCTA
TTTGGCAGCG TCTTGGAACG CGTTTTCTCT CGACTGGTTG CGCTAAACAG TTTCACTGAA
TTCACTCTGA ACAGTCAGCA GCGTGGCGAA GTCGGTTACT GGCCGCCTCG CATGGGCAAG
AAGGCGTTGA TATGA
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| Protein sequence | MDSKLLDYYN RELAYLHEMG AEFAAHYPKV AGRLGMRGID VADPYVERML EGFAFLTSRV
QLKMDAEFPR FSQRMLEMIA PGYLSPTPSM AIAKLTPDTQ KGDISNGFLV PRGTMMENQN
LKKSGVTCSY TTAHDVMLQP LCISDVSLGG VPADIPLGEL KLSGLGAASA LRIRIECEGV
PSLDQLKLDD VILYLSGPDI QALKLLELLM QHRVGILLQS VEEKPLRRVL SDDALQQEGF
APEQALLPDD LRNFDGYRLL QEYFAFPARF QFISLRQLAP FIRCCGNARI FEIIILLDKA
DSALESVVDA SHLALHCTPV INLFPKTAER LKISDSQHEY HLVVDNIRPL DYEVHSVQRL
FATVEGKREE QIFRSFWSTF SGDGSDYGAY FSLRREQRTL SEQAQRCGTR TGYIGSEVFL
SLVDEHHTPW RDDLRYLSAD VMCTSRDLPL MLLQQDQGNF VMPDSIPVGP LTLCKGPTPP
RPALAEGLSS WRLISHLQMN YLSLMDCAGG EGAAALRQLL SLYANLADAP VSRQIEAIRH
CQLSTVNRRV PEPGPVVFAR GVSITLEVDE QAFSGASPWL FGSVLERVFS RLVALNSFTE
FTLNSQQRGE VGYWPPRMGK KALI
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