Gene Pecwa_2196 details

Gene Information

• Locus tag: Pecwa_2196
• ID: 8530596
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: -
• Start bp: 2387812
• End bp: 2388534
• Gene Length: 723 bp
• Protein Length: 240 aa
• Translation table: 11
• GC content: 38%
• Product: Oligogalacturonate-specific porin
• Protein accession: YP_003259573
• Protein GI: 261821467

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.170296
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGTTA AATTATTAGC TCTGGCTGTC ACGTCATTGA TTAGCGTAAG CACAATGGCT 
GTGACAATTG ATTATCGTCA TGAAATGAAA GATACTCCGA AAAACGATCA CCGCGATCGT 
CTGTCAATAT CTCACCGTTT TGATAATGGC TTTGGTCTTT CTGCCGAAGC GAAATGGCGT 
CAAGCAAGTA ATGATAATAC CCCTAACAAG CCTTACAATG AAACTGTAAG TAATGGCACT 
GAAGTCGTTG CTAGCTATGT GTATAAAATC AATAAAACTT TTCAAGTTGA ACCTGGTTTT 
TCTTTAGATT CAAACTCTAC TTCTAACAAT TACCGCCCTT ATCTACGTGG CCGTGCGGCT 
GTTACTGATG ATTTTTCTGT TTCTTTCCGC TATCGTCCAT ACTATTTAAG AAACAGCGGG 
CTTAGAGTTG GTCAGAGTAA CAATGATCCT TCCGTTGAAA AAGGTTATAA TTTAACAACC 
GTATTAAGCT ATAAATTCCT GAAAGATTTC CAGGTTGATT ATGAGTTGGA TTATAAAAAA 
GCCACTAAAG CTGGGAAAAA ACTTTACGAT AACGAAAACT ATGACTTCAC TCATGATGTG 
AAACTGGCTT ATAAGTGGGA TAAAAACTGG AAACCTTATA TGGCGGTAGG TAACGTTGCA 
GATTCCGGTA CTAACGATCA TCGTCAAACT CGTTACCGTG TTGGTGTACA ATATAGCTTC 
TAA 

 

Protein sequence

MKVKLLALAV TSLISVSTMA VTIDYRHEMK DTPKNDHRDR LSISHRFDNG FGLSAEAKWR 
QASNDNTPNK PYNETVSNGT EVVASYVYKI NKTFQVEPGF SLDSNSTSNN YRPYLRGRAA 
VTDDFSVSFR YRPYYLRNSG LRVGQSNNDP SVEKGYNLTT VLSYKFLKDF QVDYELDYKK 
ATKAGKKLYD NENYDFTHDV KLAYKWDKNW KPYMAVGNVA DSGTNDHRQT RYRVGVQYSF