| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_2107 |
|---|
| Symbol | |
|---|
| ID | 8530507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 2296270 |
|---|
| End bp | 2297598 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | PTS system, lactose/cellobiose family IIC subunit |
|---|
| Protein accession | YP_003259489 |
|---|
| Protein GI | 261821383 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.714566 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCCT TATATCAATC AATGATTGCC GCTATCGAAC AATCGATTAC CCCGCTGGCT
GGGCGTTTAG GGCAACAAAA GTATGTGATC GCTATCCGCG ATGGTTTCAC CGCCGCACTC
CCCTTTATGA TCATCGGCTC GTTTATGTTG GTGTTTATTT TTCCCCCCTT CTCCACCAAT
ACCACCGTCG GATTTGCACG CGCCTGGCTG GACTTTTCTA TCACCTATCG TGAACAATTG
ATGCTGCCTT TTGAATTGAG CATGGGCGTA ATGACATTTT TTATCTCCGT GGGCGTGGGG
GCCAGCCTGG GGCGACAGTT TCAACTCGAT TCCGTGATGT CTGGCCTGTT AGCATTTATG
GCTTTCCTGC TCGTCGCTGC CCCTTACGCC GATGACAAAA TTTCTACTGA GTATCTGTCA
GGACAAGGGA TTTTCACCGC CTTACTCACA TCGATCTACG CTACGCGTGT TTATGCCGCG
CTGAAACAGC ACAATATTAC GATCCGCCTG CCGAAAGAGG TGCCAACGGG GGTCGCCCGC
TCATTTGAAA TTCTCATTCC CGTGTTAGTG ATTGTCGCCA CGCTGCACCC GCTCAATCTC
TTCGTTGAGG CGCAAACGGG GATGATCATT CCCGAAGCCA TTATGCACCT GCTGGCACCG
CTGGTTTCTG CCTCAGACTC CCTGCCTGCC ATTCTGCTGT CTGTGCTGCT GTGCCAGCTT
TTCTGGTTTT CGGGTATCCA CGGTTCGCTG ATTGTCACTG GCATCATGAA TCCATTCTGG
ATGACTAACC TAGCCGTGAA TCAGGCTGCG CTGGCGGCAG GTGAAGTACT GCCACATATC
TATCTACAGG GATTTTGGGA TCACTATCTG TTAATTGGTG GCGTCGGCTC AACGCTGCCC
TTGGCATTTC TACTATTACG CAGCAAGGTC ATGCAGTTGC GCACCATCGG CAGAATGGGC
GTCGTGCCGA GCTTCTTTAA CATCAACGAA CCGATCATGT TCGGTGCGCC CATCATCATG
AACCCGATGC TGTTTATCCC TTTTGTCTTT GTCCCCATGA TCAATGCTGT GCTGGCGTAC
ACGGCAACCA AAATGGGTTG GCTGGCACAG GTCGTATCAC TCACGCCGTG GACGACACCG
GCTCCCATTG GCGCATCGTG GGCCGCAAAC TGGAGTTTCA GCCCGCTGAT CATGTGCCTG
CTGTGCATGG TGTTTTCCGC GCTGATGTAT TTACCGTTCC TGCGCGCCTA TGAACGGACG
TTGATGAAAA CTGAGGAACA AAAAATACAG AACGATTTGT CGCTGAAAAA AACAGTGAAT
AGTCATTAA
|
|---|
| Protein sequence | MSSLYQSMIA AIEQSITPLA GRLGQQKYVI AIRDGFTAAL PFMIIGSFML VFIFPPFSTN
TTVGFARAWL DFSITYREQL MLPFELSMGV MTFFISVGVG ASLGRQFQLD SVMSGLLAFM
AFLLVAAPYA DDKISTEYLS GQGIFTALLT SIYATRVYAA LKQHNITIRL PKEVPTGVAR
SFEILIPVLV IVATLHPLNL FVEAQTGMII PEAIMHLLAP LVSASDSLPA ILLSVLLCQL
FWFSGIHGSL IVTGIMNPFW MTNLAVNQAA LAAGEVLPHI YLQGFWDHYL LIGGVGSTLP
LAFLLLRSKV MQLRTIGRMG VVPSFFNINE PIMFGAPIIM NPMLFIPFVF VPMINAVLAY
TATKMGWLAQ VVSLTPWTTP APIGASWAAN WSFSPLIMCL LCMVFSALMY LPFLRAYERT
LMKTEEQKIQ NDLSLKKTVN SH
|
|---|
| |