| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_1597 |
|---|
| Symbol | |
|---|
| ID | 8529992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 1728416 |
|---|
| End bp | 1730224 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003258994 |
|---|
| Protein GI | 261820888 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.754785 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTAT CAGACATGGC GGTTCGCCAA GCCAAGGCAA CAGGCAAGGC CTATACACTT
GGCGACATCG ATGGTCTCTC ATTGGCTGTG ACCGACATGG GCGGTCGGTC TTGGCACTTC
CGCTATTCTT GGGCTGGCAA GCAGAAACGT ATGTCCTTGG GGACTTACCC TGAGGTCGGT
TTGCGCGAAG CGCGGACTCT GCGTGATCAG GCCCGAGCCT TGCTTGCCAA GGGCATCAAT
CCCAAACTTG ATCGTAAGCA TAAACGGCAG TTCGTACGGC TTGCCGACGA GCACACATTC
AAGGCTGTGT TTCTTCAATG GGTTGAGCAT CGTAGGCTAG AGCTCAAGGA AGGGCGCAAC
AGTACCTTGT CGCAGATCCT GCGTATCTTT GAGCGCGATG TGCTGCCAAG CCTGAGTAAG
CTATCTATTT ACGACGTTCG TCGTGCCGAC TTGCTGAACG TGCTCTCCAA GATTGAGCAG
CGTGAGGCGT TCACCACTGC AGAGAAAGTA CGCTCCTGGC TCAATCAATT GTTTCGCTTT
GCGCAGGTGA AAGTCGAAAG ACTGGAGAGC AATCCGGCAT CTGACTTGGA TGTGGTAGCT
GTTCCTGCTC CGCCTGTTGT TCACAATCCG TTCCTGCGTT TACCTGAGCT ACCCGAACTT
CTGCAGAAAG TACGAGGCTA TCGTGGAGCG ATCACGACGC AACTTGGAAT CCGCTTGTTG
TTGCTGACGG GAGTGCGTAC AGGCGAGCTA CGGTTGGCGG CTCCGGAGCA GTTCGATTTA
GAACAGGGGC TGTGGATTAT TCCTCCGGAA GTGGTCAAGC AACTGCAAAC CGATATGCGC
AAGAAAGGTA AGCGGCCTCA GGACATTCCC TCCTACATCG TACCGCTGTC TATTCAGGCG
ATAGAGATCG TTCGCTACCT GCTCGAAGAG GTGAGGCCAG CGCAACGGTA TCTTTTCTCG
CATCGCAGCG ATCTGAAAAA GCGTATCAGC GAGAACACGT TGAACGGTGC CCTCAAGCGT
ATGGGTTATC AGGATTTGCT CACTGGTCAC GGCATCCGTG GCACGATTTC CACGGCACTC
AACGAAGTGG GCTACCCCAA AGTTTGGGTG GATGCCCAGC TTTCGCATTG CGATCCCAAC
CAGGTGAGCG CAGCTTACAA CCATGCACTC TATGTCGAGC CTCGGCGCAA GATGATGCAG
GATTGGGCGG ACCGGTTGGA CTTGCTGGAG CAGGGAGAAG TAGAAGCCGC CAGTCAGCAT
CTGACCATTC GCATTGATGG TGTGCCTGTT CTGGATGAAA GCAATGGGGC AGATGCAATG
TCGAAAGATG TGTCACCCAT TATCGGTGGT ATTACGTCTC ACCGCTTGTC TGCTGTGCCG
GCACGCCCTG TGCCTGAACC TGTCGTTGAC ATCCCTGTTT CTGACCTGCA GCGTGAGCGG
ATGGAAATGC TCGCAGCTTA TGAAGCACCG CACAACTTGC CAGTCGTTCA GTTTTCCAAG
CTGGCCGGTA AATCCAAGGA CCAGATCAAT CGAGAAATCA AAGCTGGCAA GTTGTTGACA
ATCAGTCTTG GGAACCGTGG GCAGAGAGTG CCTGAGTGGC AACTGGTGCC GATGAAACTC
AAACTGACGC AGATGATGAT GAAGCATCTT TCGCATGCTG AAGGATGGGA TGTATATCGT
TTGTTGAGCA ACCCTCATCC TGAGCTGGAT GGTTGTGCAG CAGTTGATAT TATTAAGCCC
ACTAATATGA GCAGTGTTGT GCAGGTTTTG CTGTCATTAC AAGCATTCGG AGCTGAGAGA
AAAGTGTGA
|
|---|
| Protein sequence | MALSDMAVRQ AKATGKAYTL GDIDGLSLAV TDMGGRSWHF RYSWAGKQKR MSLGTYPEVG
LREARTLRDQ ARALLAKGIN PKLDRKHKRQ FVRLADEHTF KAVFLQWVEH RRLELKEGRN
STLSQILRIF ERDVLPSLSK LSIYDVRRAD LLNVLSKIEQ REAFTTAEKV RSWLNQLFRF
AQVKVERLES NPASDLDVVA VPAPPVVHNP FLRLPELPEL LQKVRGYRGA ITTQLGIRLL
LLTGVRTGEL RLAAPEQFDL EQGLWIIPPE VVKQLQTDMR KKGKRPQDIP SYIVPLSIQA
IEIVRYLLEE VRPAQRYLFS HRSDLKKRIS ENTLNGALKR MGYQDLLTGH GIRGTISTAL
NEVGYPKVWV DAQLSHCDPN QVSAAYNHAL YVEPRRKMMQ DWADRLDLLE QGEVEAASQH
LTIRIDGVPV LDESNGADAM SKDVSPIIGG ITSHRLSAVP ARPVPEPVVD IPVSDLQRER
MEMLAAYEAP HNLPVVQFSK LAGKSKDQIN REIKAGKLLT ISLGNRGQRV PEWQLVPMKL
KLTQMMMKHL SHAEGWDVYR LLSNPHPELD GCAAVDIIKP TNMSSVVQVL LSLQAFGAER
KV
|
|---|
| |