| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_1494 |
|---|
| Symbol | |
|---|
| ID | 8529885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 1619519 |
|---|
| End bp | 1621318 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | bifunctional NADH:ubiquinone oxidoreductase subunit C/D |
|---|
| Protein accession | YP_003258900 |
|---|
| Protein GI | 261820794 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0962881 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATT TAACGACACA CGATCTCGCT CAGCCAGGCT GGCAAACTCG CGATCATCTT
AATGATCCGG TCGTTGGCGA ACTGTGTAAC CGTTTTGGAC CAGATTCATT TACTGTACAG
GCAACCCGCA CGGGTATTCC CGTTGTGTGG GTTAAACGTG AGCAATTACT CGATGTTGTC
ACATTCCTGA AAAAACAGCC AAAGCCTTAT GTCATGCTGT TTGACCTGCA CGGTATGGAT
GAGCGTCTGC GTACCCATCG TGAAGGTTTA CCTGCTGCCG ACTACTCCGT TTTTTATCAC
TTAATTTCTA TCGAGCGTAA CCGCGACATC ATGCTAAAAG TCGCGTTGGC CGAGAGTGAT
CTGCATTTGC CGACCGTGAC CAAACTGTTT CCGAATGCCA ACTGGTATGA GCGGGAAACG
TGGGAGATGT TCGGCATGAC CTTCGATGGT CACCCAAATC TGACGCGCAT CATGATGCCG
CAGACGTGGG AAGGGCATCC ACTGCGTAAA GATTATCCGG CGCGTGCGAC CGAATTCGAT
CCTTTCGAGC TGACCAAGCA GAAAGAAGAT CTGGAAATGG AGTCGCTGAC GTTCAAACCA
GAAGAATGGG GCATGAAGCG CGGCACGGAG AATGAGGATT TCATGTTCCT CAACCTCGGT
CCCAACCACC CCTCTTCACA CGGTGCCTTC CGTATTATCC TGCAATTGGA TGGTGAAGAA
ATCGTCGACT GCGTGCCTGA TGTGGGTTAC CACCATCGTG GCGCAGAGAA AATGGGCGAG
CGTCAATCCT GGCATAGCTA CATTCCTTAC ACTGACCGTA TTGAATACCT TGGCGGCTGC
GTTAACGAAA TGCCGTATGT GCTGGCCGTT GAGAAACTGG CGGGTATTGA GGTACCGGAT
CGTGTCAAAA CGATTCGTGT GATGCTGTCC GAACTGTTCC GTATTAATAG CCATCTGCTG
TACATCAGTA CCTATATTCA GGACGTCGGC GCAATGACAC CGGTGTTTTT TGCATTTACG
GACCGCCAGA AAATTTACGA TTTGGTTGAA GCGATTACCG GTTTCCGTAT GCACCCGGCG
TGGTTCCGTA TTGGCGGTGT GGCGCACGAT CTGCCACGCG GCTGGGAACG TCTGCTGCGT
GAGTTCCTTG ATTGGATGCC GGCTCGTTTG GACACCTATG TCAAATCCGC GCTGCAGAAC
ACCATTCTGA AAGGCCGTAC TCAGGGCGTC GCCGCCTACA ATGCGAAAGA AGCGTTGGAT
TGGGGCGTAA CGGGTGCGGG TCTGCGTGCC ACTGGTATTG GTTTTGACGT GCGTAAATGG
CGTCCGTATT CCGGCTATGA AAACTTTGAC TTTGAAGTGC CAGTAGGTGA CGGCATCAGC
GATTGCTATA GCCGCGTTAT GCTGAAAGTC GAAGAACTGC GTCAGAGTTT ACGTATTCTG
GATCAGTGCC TCAAGAACAT GCCAGAAGGC CCGTTCAAAG CGGATCACCC GCTGACGACG
CCGCCGCCAA AAGAGCGCAC GTTGCAGCAT ATCGATACGC TGATCAACCA CTTCCTTCAG
GTTTCCTGGG GGCCGGTGAT GCCTGCCAAT GAATCATTCC AGATGGTTGA GGCAACGAAA
GGTATCAACA GCTATTACCT GACCAGCGAC GGCGGCACGA TGAGCTACCG TACCCGTATT
CGCACGCCGA GCTATGCGCA CCTGCAACAG ATTCCTTCTG TCATTCGTGG GTGTCTGGTA
TCCGACCTGA TCGTTTACCT CGGCAGTATT GATTTCGTAA TGTCAGATGT GGACCGCTAA
|
|---|
| Protein sequence | MTDLTTHDLA QPGWQTRDHL NDPVVGELCN RFGPDSFTVQ ATRTGIPVVW VKREQLLDVV
TFLKKQPKPY VMLFDLHGMD ERLRTHREGL PAADYSVFYH LISIERNRDI MLKVALAESD
LHLPTVTKLF PNANWYERET WEMFGMTFDG HPNLTRIMMP QTWEGHPLRK DYPARATEFD
PFELTKQKED LEMESLTFKP EEWGMKRGTE NEDFMFLNLG PNHPSSHGAF RIILQLDGEE
IVDCVPDVGY HHRGAEKMGE RQSWHSYIPY TDRIEYLGGC VNEMPYVLAV EKLAGIEVPD
RVKTIRVMLS ELFRINSHLL YISTYIQDVG AMTPVFFAFT DRQKIYDLVE AITGFRMHPA
WFRIGGVAHD LPRGWERLLR EFLDWMPARL DTYVKSALQN TILKGRTQGV AAYNAKEALD
WGVTGAGLRA TGIGFDVRKW RPYSGYENFD FEVPVGDGIS DCYSRVMLKV EELRQSLRIL
DQCLKNMPEG PFKADHPLTT PPPKERTLQH IDTLINHFLQ VSWGPVMPAN ESFQMVEATK
GINSYYLTSD GGTMSYRTRI RTPSYAHLQQ IPSVIRGCLV SDLIVYLGSI DFVMSDVDR
|
|---|
| |