Gene Pecwa_1198 details

Gene Information

• Locus tag: Pecwa_1198
• ID: 8529587
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: +
• Start bp: 1297312
• End bp: 1297887
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 48%
• Product: RNA polymerase sigma factor RpoE
• Protein accession: YP_003258619
• Protein GI: 261820513

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.00000152256
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGAGC AACTGGCAGA TCAGGTTCTG GTCGAGCGAG TCCAAAAAGG CGATCAAAAA 
TCGTTTAACT TGTTGGTCGT TCGTTATCAG CATAAGGTAG CGAGCCTGGT ATCGCGGTAT 
GTTCCACAAG GGGACGTGCC GGACGTGGTA CAGGAATCGT TTATTAAAGC GTATCGCGCG 
TTAGAATCAT TCCGTGGCGA TAGTGCGTTT TACACATGGT TGTATCGTAT TGCCGTGAAT 
ACAGCCAAGA ATTATCTGGT AGCTCAGGGA CGCCGCCCGC CTTCCAGCGA CATTGATGCC 
AATGACGCGG AAAACTATGA AAATGCGGGT GCGCTGAAAG AAATATCGAA CCCTGAGAAT 
TTAATGTTGT CAGAAGAACT GCGAAGCATA GTTTTCCGAA CTATCGAGTC TTTACCGGAA 
GATTTACGTT TAGCGATTAC GCTGCGTGAG TTGGACGGTT TAAGCTACGA AGAGATTGCC 
GTGATTATGG ATTGTCCCGT CGGCACGGTT CGTTCTCGTA TTTTCCGAGC GCGGGAAGCT 
ATTGATAATA AAGTACAACC GCTTATTCAG CGCTAG 

 

Protein sequence

MSEQLADQVL VERVQKGDQK SFNLLVVRYQ HKVASLVSRY VPQGDVPDVV QESFIKAYRA 
LESFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDIDA NDAENYENAG ALKEISNPEN 
LMLSEELRSI VFRTIESLPE DLRLAITLRE LDGLSYEEIA VIMDCPVGTV RSRIFRAREA 
IDNKVQPLIQ R