Gene Pecwa_1083 details

Gene Information

• Locus tag: Pecwa_1083
• ID: 8529457
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: +
• Start bp: 1173051
• End bp: 1176548
• Gene Length: 3498 bp
• Protein Length: 1165 aa
• Translation table: 11
• GC content: 55%
• Product: type VI secretion protein IcmF
• Protein accession: YP_003258504
• Protein GI: 261820398

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.199978
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTAAAA CAATTATAAC CTTTCTACGC AAGCAGTTGC CTAAACTGAA ACCCTCCTGG 
CTGCTTTTGG GGGCGCTACT GTGGGTCGTG GTGTTGGTTC TGGCCTGGTG GCTGGGGCCG 
CGTTTGACGG TAGGCGAGTC GCGTCCGTTA CAGGGGATCT GGGGCCGCGT GGTGTTCACG 
CTGGTCTGGC TGTGGCTGGC GTTCTCCTAT AGTGCCTGGC TGGTATGGCG GCGTGTGCAA 
CTGATGCGGT CAGAGCGTCA TGAGCAACAG GTGACCGAGC AGGATCCCCT ACAGGTGTAT 
GTCGACGGCC AGCAGACGTT TCTCGATCGC TGGCTGGACG CGTTTCAGAC CCAGTTGGGT 
AAAAAAGCGC TGTATGCGAT GCCGTGGTAT CTGACGATTG GTTTGGCTGG CAGTGGTAAA 
AGTAGCCTGA TCCACCGTGC CAACCCGGCA AATAAAATGA ATCCGAAGCT GGATGCAGAG 
CTGCGGGATG TGGCAGCAGG CCAGCAGGTG AGCAGTTGGG TCGGAGAATC TGCCGTCATC 
TGGGATCCTA GCGGGCAGCT ACTCGCACAG CCTGAATTGG AAGGCGATGC GCTCGGGCAG 
CGTCATGCTC GGCTATGGCA GCACCTGCTA CAGTGGCTCA GTGAGAATCG CCGCCGCCAG 
CCGCTTAACG GTCTGGTTCT TACGCTGGAT ATCTCCTGGC TGGCACAGGC TGGTGTCGCA 
GATCGCAAAG CCTACGCGCA AGTCATGCGT GCCCGTTTGC AGGAAATTTC GGTCAGCATC 
AATACGCGTT TACCGGTGTA TATCGCACTG ACTCGGCTGG ATATGCTGAG CGGCTTCGAC 
AAGGTCTATC GCCAGTTGAA CCGCGACGCG CGTCAGGCGG TATTAGGGGT GACGTTTACC 
CCACAGGCGA GCAACAGCAA AGGCTGGTTA GAAGAGCTGG AGCGTTTTTG GGATGAGTGG 
GTCACGCACC TGAATGACAA CCTGCCAGAC ATGCTGTTGA CCCAATCGGA CAGAAGCGTG 
CGCAATTCGC TGTTCTCGTT TGTTCGCCAG TTGGCCGGGG TGAAAGACTA TGTGATGGAA 
GTGCTGACGG AAACGTTAGC AATAGGTGAA GATCGCGCGT TCCTGATCCG TGGCGTCTAC 
GTCAGCTCTG TTTATCAACA AGGGGTGCCG TTTGATGCTT TTGCACAGTC GGCCTCCCGA 
CGTTATCAAC TGCCAGAGCC GATTAACCCC GCGTTGCGCG GTGAATCGAA TACGTTTTTT 
GTCCAGCGCC TCTTCCCTGA CGTCATTTTC CCTGAAGCCA GCTTGGCCGG AGAAAACCGA 
CTGCATAGCC TCTATCGTCG GCGTCGGTTG AGTATTGGTG TGGGCTGCAT GCTGCTCGCC 
GGTTTGGTGC TGGTGGGCAG TTGGCACCAT TTCTATCGGG TCAATGAAGA AGCCGGGCGT 
AACGTACTGA CGAAAGCGCA GGCGTTTATC GGCACTAATG AACTGGAAGG CCAACCGGGC 
TACGGCTATC AGCAGTTGCC GCGTCTGAAT TTGATTCGTG ATGCGACATT ATCTTTTGGT 
AACTATCACG AACGCACGCC GCTGCTGGCC GATCTGGGTC TGTATCAGGG CGATAAGATC 
GGGCCTTATG TCGAGGGCAC CTATCTGCAA ATGCTGAATC AGCGCTTTTT ACCGGCGGTG 
ATGCAGGGGT TGCTGGAGGA TTTGAATCAG GCGCCTGCCA ATAGCGAGCA AAAACTGACC 
ATTCTGCGTG TAATGCGCAT GCTGGACGAT GCTTCTGGGC GCAATAAAGC GCTGGTCGAA 
CAGTTTATGG CGCAACGCTG GCAAAAGGCA TTTCCTGCTC AAGGTCAGGT GCAGGAAGAA 
CTGATGCAAC ATCTGGATTA CGCCCTCGAT CATACCAACT GGCATCAGTC CCGTGAGCAA 
AAAGATGCGG TAGCGATTAG CACTTTTGCA CCGTTTAATG GGCCGATTAC GCTGGCTCAG 
CAGGAACTAA GCAAACTGCC GATGTATCAG CGCGTTTATC AGAGTCTGGT CATGAAGGCG 
ACTCAAGTGC TGCCGCCGGA TTTAGCGATC CGTGATGAAG TCGGGCCGAC GTTTGATCCG 
GTGTTTTCGC TGCGTAACGA CAAAGCGGGG AGTGTGCCAC GACTGCTAAC CTATCCCGGC 
TTCAGTGATT ATTACCTCAA GCAGGACAAA GCGCTGCTAG AGCTGACGGC ATTGGATGCC 
TGGGTTCTGG GACAGCGTGA ACGTGCACAG TTCAGCGAGG CCGATCGGCG GGAAATTCTG 
CGTCAGGTGA ATGACCGCTA CATTACGGAT TACATCAACC AGTGGCAGAA AGTGTTAGCG 
AACATTGATG TGCAGGCGCT CGATACGCCA GAACAGGCGC TAGATATCCT CACGGACATT 
ACCGGTAACG ATCAGCCCTT CCAGCGCGTG CTGACGACGG TCAGTGATAA CACCCGCATT 
CGTAAGCTTG CCGATGATGA TAACGACACG GCGCAGAACA TCAATACGCG TACTGGTCGT 
CCGTTTATGA CCATCAATGC GGCGCTGAGT GGACGCGGTG AGCAGGGGCC GCTGGTGCAA 
GAGGTCAATC AGAAACTGAC CGATCTCTAT CACTATCTCG ACCAGATCGT TAACGCGACC 
GACCCGGGAC AGGCGGCATT GAAGGCGATG CAGGCACGGC AGGGAAATAA ATTTGCCGAT 
CCGGTATTTG CCTTACAGCA ATATGCTCGC AGCCTCCCTG CGCCGTTGGA CCGCTGGGTA 
GGACAATTAG CCGGAGAGAG CGCCAGTCTG GTGACTGGGC TCGCGATGTC ATCGCTGAAT 
CAGGAATGGC TGGATAAAGT CGTGACGCCA TTCAACGAGA AGCTGGCGAA TCGTTACCCC 
TTCGATCCGT CATCCGACAA AGATGTGCCG CTATCGGAAA TGGAAATGTT CTTCATGACG 
GGCGGGACGC TGGACAGCTT CTATCAAACC AACCTCAAAG CGATGATGGA AAGCGGCATG 
CTGGAAGAAG GCATGGCGTC ACCTATGCAG GCCGAGCTGA TGAAACAGCT TGAACGCGCT 
AATCGTATCC GTCAGACCCT GTTTAATGCG CAGGGCAGCC TGGAAGTGCA TTTCGTTCTG 
GAACCGCTGG AATTAACGGC GAACAAGCGC CGCAGCGTGC TGAATCTGGA TGGACAGCTA 
CTGGAATACA GCCACGGCCG TCGCCAGAAA ACGCCGCTGG TGTGGCCAAA CAGTATGCGC 
GACGGGGCTG AAAGCAAGTT AACACTGGTG CCGGACGATC GTGAGCGCTC GCCGCGCAGC 
CTGAGCTTTA ACGGGCCGTG GGCCATGTTC CGGTTAATCA ATAGCGATCA ACTGACGAAG 
GTTAATGAGA ACACCTTTGA CGTGCGTTTC TCGCTGGAGA ATGGGGCGAT GACGTATCGC 
GTTTATACCG ATGCCAGCCA TAACCCGTTT GCTGGTGGTC TGTTCAGCCA ATTCACGTTG 
TCTGACTCGC TTTATTAA 

 

Protein sequence

MFKTIITFLR KQLPKLKPSW LLLGALLWVV VLVLAWWLGP RLTVGESRPL QGIWGRVVFT 
LVWLWLAFSY SAWLVWRRVQ LMRSERHEQQ VTEQDPLQVY VDGQQTFLDR WLDAFQTQLG 
KKALYAMPWY LTIGLAGSGK SSLIHRANPA NKMNPKLDAE LRDVAAGQQV SSWVGESAVI 
WDPSGQLLAQ PELEGDALGQ RHARLWQHLL QWLSENRRRQ PLNGLVLTLD ISWLAQAGVA 
DRKAYAQVMR ARLQEISVSI NTRLPVYIAL TRLDMLSGFD KVYRQLNRDA RQAVLGVTFT 
PQASNSKGWL EELERFWDEW VTHLNDNLPD MLLTQSDRSV RNSLFSFVRQ LAGVKDYVME 
VLTETLAIGE DRAFLIRGVY VSSVYQQGVP FDAFAQSASR RYQLPEPINP ALRGESNTFF 
VQRLFPDVIF PEASLAGENR LHSLYRRRRL SIGVGCMLLA GLVLVGSWHH FYRVNEEAGR 
NVLTKAQAFI GTNELEGQPG YGYQQLPRLN LIRDATLSFG NYHERTPLLA DLGLYQGDKI 
GPYVEGTYLQ MLNQRFLPAV MQGLLEDLNQ APANSEQKLT ILRVMRMLDD ASGRNKALVE 
QFMAQRWQKA FPAQGQVQEE LMQHLDYALD HTNWHQSREQ KDAVAISTFA PFNGPITLAQ 
QELSKLPMYQ RVYQSLVMKA TQVLPPDLAI RDEVGPTFDP VFSLRNDKAG SVPRLLTYPG 
FSDYYLKQDK ALLELTALDA WVLGQRERAQ FSEADRREIL RQVNDRYITD YINQWQKVLA 
NIDVQALDTP EQALDILTDI TGNDQPFQRV LTTVSDNTRI RKLADDDNDT AQNINTRTGR 
PFMTINAALS GRGEQGPLVQ EVNQKLTDLY HYLDQIVNAT DPGQAALKAM QARQGNKFAD 
PVFALQQYAR SLPAPLDRWV GQLAGESASL VTGLAMSSLN QEWLDKVVTP FNEKLANRYP 
FDPSSDKDVP LSEMEMFFMT GGTLDSFYQT NLKAMMESGM LEEGMASPMQ AELMKQLERA 
NRIRQTLFNA QGSLEVHFVL EPLELTANKR RSVLNLDGQL LEYSHGRRQK TPLVWPNSMR 
DGAESKLTLV PDDRERSPRS LSFNGPWAMF RLINSDQLTK VNENTFDVRF SLENGAMTYR 
VYTDASHNPF AGGLFSQFTL SDSLY