Gene Pecwa_1081 details

Gene Information

• Locus tag: Pecwa_1081
• ID: 8529455
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: +
• Start bp: 1171027
• End bp: 1171587
• Gene Length: 561 bp
• Protein Length: 186 aa
• Translation table: 11
• GC content: 58%
• Product: type VI secretion-associated protein, VC_A0118 family
• Protein accession: YP_003258502
• Protein GI: 261820396

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.212059
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTCTGA CGATGGCACC CCTACTGTTG GCAACCGCTG CAACGCCCGA TCCTGCCTGG 
CAGTCGTTAT GGGAACAGTG CCGTAATGAG ACGGCTTCAG AGATCCGTCT GGCGTGCTAT 
GACGCTCTGG GCCGGGAAGC TCAACGCACC GGCACCCTAT CCCCACAGGA TGATAAAACG 
GCCGCTGGCG GGGCATTTCA ACTGGGACGT GAAGTAGATA GCGGTGATAT GACGTTAACC 
CGTGTGCTCG CCGATGGTAA TACGCTAGTG ATTAGCTGTG CCAGCAATAT CACGCACTTG 
CGTTTAACAC TGAGTCAACC TTGGGCGGGG GAGTCTGTCA CGTCGCAGCT TGATGGCGTG 
ACGGTTTCCG ACAGTTGGTT TATCCGCAAT CGCGGGCTGC TGCTGGAATC CGGGCGCGGT 
CTGGTGGCGA TTGATGCGCT AAAGCGTTGG ATTGGGCATC GTGAACTGGT GCTTAACGGC 
GCGGACGGTC ACTCGCTGCG TATTGAACTC GCTGGGCTGG GTGAAGCATT AGCGCCGCTG 
CGTCAGCAGT GTCACTGGTA A 

 

Protein sequence

MFLTMAPLLL ATAATPDPAW QSLWEQCRNE TASEIRLACY DALGREAQRT GTLSPQDDKT 
AAGGAFQLGR EVDSGDMTLT RVLADGNTLV ISCASNITHL RLTLSQPWAG ESVTSQLDGV 
TVSDSWFIRN RGLLLESGRG LVAIDALKRW IGHRELVLNG ADGHSLRIEL AGLGEALAPL 
RQQCHW