Gene Pecwa_1078 details

Gene Information

• Locus tag: Pecwa_1078
• ID: 8529452
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: +
• Start bp: 1166099
• End bp: 1166875
• Gene Length: 777 bp
• Protein Length: 258 aa
• Translation table: 11
• GC content: 53%
• Product: type IV / VI secretion system protein, DotU family
• Protein accession: YP_003258499
• Protein GI: 261820393

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.149197
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCATCG AGGTTATTAA GAACGATCAA TTGGGCGATC TGCTTTTTGA CCACGCCCGA 
CAGTTGGATA TGGATTCCGA CTACTGGTTC CGCCTGCGTG GACAAAGCAT TAATCCGATG 
ATTGATGCCG TTACGCCGTT ATTGGGCATG GTGGAGCGGG TACGCCAGCT CTCTGCCTAT 
GAGGGCGTGG AGGATCTCTA TCAGCGCGTG GTATCTGAAG TTCAGGCTAT CGAACAGGAA 
TTGCACTCTC ATAGCTATGA GAACGGTGTG ATCCTGTCTT TCCGCTACAT CCTCTGCACG 
TTTATTGATG AAGCCGTGAT GGGGCGGGAG TGGGGTGGAC AAAGCATGTG GTCGGCACAC 
TCTCTGCTGA CTCGTTTTCA TAATGAGACC TGGGGGGGCG AAAAGGTTTT CGTCCTGCTA 
GAGAAGCTGT TGGACGATCC TACCCGCTAT CGCGACATTC TGGAGTTTAT CTACCTCTGC 
CTTTGTCTGG GCTTTGAAGG GCGCTATCGG GTGATGACTC AAGGGCGTGA AGAGCTGGAT 
CGCGTCGTGA GTAAGCTACA TGACACCCTG CGCCCTGAGC CTACGAATGC GCCAACGGTA 
TTCCACCTGA ATCTGGGGCA GCAGGCCTCG CGCTACCAAC TGCGTAGGCA GGTGTCATTG 
CGCACGTTGT TTATCGGCGT GTGTGTAGCC TTGGTGGCCG CATTCGGCCT GTACCGTTAC 
CAGCTTACTC ATCAGACCCA GGACGTACTG CGTCAACTGG GAGAATTATT ACAATAA 

 

Protein sequence

MSIEVIKNDQ LGDLLFDHAR QLDMDSDYWF RLRGQSINPM IDAVTPLLGM VERVRQLSAY 
EGVEDLYQRV VSEVQAIEQE LHSHSYENGV ILSFRYILCT FIDEAVMGRE WGGQSMWSAH 
SLLTRFHNET WGGEKVFVLL EKLLDDPTRY RDILEFIYLC LCLGFEGRYR VMTQGREELD 
RVVSKLHDTL RPEPTNAPTV FHLNLGQQAS RYQLRRQVSL RTLFIGVCVA LVAAFGLYRY 
QLTHQTQDVL RQLGELLQ