Gene Pecwa_0980 details

Gene Information

• Locus tag: Pecwa_0980
• ID: 8529354
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: -
• Start bp: 1052355
• End bp: 1054274
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 55%
• Product: PTS system, beta-glucoside-specific IIABC subunit
• Protein accession: YP_003258404
• Protein GI: 261820298

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.668297
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTATC AAAAACTTGG AGTCGACATA CTCGCATTGA GCGGCGGCAA GCAGAACGTC 
AGTAAACTGA CCCATTGCGC CACCCGCTTA CGCTTTGAGT TCAACGACAA CCATGCGGTA 
CAGGCAGACG CGATTGCTAA ACTCCCCGGC GTCATTAGCG TGGTCGATCG CGGCGGTCAG 
TTTCAGGTGG TGATCGGCAA CGACGTTCAA ATCACCTACC GGGCGATTTT GAATGAGATT 
GGCGAAATGA ACGGCCAGCG CCACACAGGT AGTAAGGAAC AGCAGAAGAA AGGCGGCATT 
TTCTCGCAAA TCATCAGCGT GATTTCCACC ACCTTCACCC CCGTCATTCC GGCAATTACG 
GGCGCGGGGA TGATCAAAGC GCTGCTGGCA ATCCTCAAGC TGACGGGGTT AATTTCCGCC 
GACAGCACGA CCTATCGTCT GCTGGATACC ATCTCCGATG CGGCTTTCTT CTTCCTGCCC 
GTGCTGCTGG CCTACGGTGC CTCCATCAAG TTCGCCTGTA ACCCCATTCT GGCAATGACG 
ATTGCTGGCG CCTTGTTGCA CCCGAATCTG GCCCAGCTAC TGGCATCAGG CGGGCCGATC 
AGCTTTATCG GCATTCCGGT ACGGCTGGCG GACTACGCCG GATCGGTGTT ACCGATCATT 
CTCACCGTGT GGATCATGTC CTACATCGAG CAATTTGCTG AAAAGATCTC GCCGTCCATG 
ATCAAATTTT TCACCAAACC GATGATCGTG CTGCTGTTTA CCGCACCGCT CGCGCTGGTA 
GTGATTGGGC CTTTCGGTAT TTTACTCAAC GATCTGGTCG CCAGCGGTGC TGCCATCATT 
GACGGAAAGG CAAGCTGGCT TATTCCGATG TTGATGGGCG GCCTGCAACC GTTCCTGGTG 
ATCACCGGTA CGGCCTGGGC GATGACGCCG ATTGCCACCT CGCAGCTTAC CCGTAACGGT 
TTCGAGATGA TCAACGGTCC CGGCATGCTG GCGTCCAACA TTGCGCAGGG TGCCGCCACG 
CTGTGCGTCG CGTTTAAAAC CAAAAACAAA AATCTGAAAC AACTTGCCTC TTCAGCAGGC 
TTCACCGCCC TGCTGGGGAT CACCGAGCCT TCCCTATATG GGGTTACGCT GAAACTGAAG 
AAACCGCTAA TAGCCGCCAT GATCGGCGGG GGCTGTGCGG GTATCTATGC GGGTTTAGCT 
GGGTTGGTTC GCTACGCTTT CGTTTCACCG GGGCTGGCAG CGCTGCCTGC TTTTATTGGT 
GAAAACCCGA TGAATATCGT ACATGCGCTG ATCACCTGCG CCATTGCGAT TGTCGTCACG 
TTTGCGCTTA CCTGGATCAT GGGATTCGAC GATCCGGTGG ATGAAACGGA CAATGCTCAA 
GCAGACTCAG CCCAAGCAGA CCCACACCAC CCAGCACCGT CAGTTAATAC CACACAAAAA 
TCGCAGGCCA TAGCAGGTCA CACTGAACCA CAGGCGATTC TCAGCCCGCT GTCCGGCAAG 
CTGGTCGCGC TGAATGACAT CAACGATGAC GTATTCTCAC AGGGATTACT GGGGCAAGGC 
GTGGCGATTA TTCCTGACAA CGGTGAAGTC GTCGCGCCCG TCAGTGGGGA AATCATCACG 
TTCCTTGAGT CCAAACATGC CGTCGGTATC CGCGCGGATA ACGGTCTGGA ATTACTGATT 
CATGTCGGGC TGGATACGGT GAACCTCAAC GGCAAACACT TTACGGGTTA CATCAAACCG 
GGCGACCGCG TCACCGCTGG CGACAAATTA ATTAGCTTCG ATCTGCATGA GATCACACGT 
TTGGGGTATG ACCCGATTAC GCCAGTCGTG ATCATCAACA GCGATGACTA CGCCAGCGTC 
GTCTGTATCA CGCCACAGCC GATCGCACAG ATGGATACCA TCATTAACGT GAACGCCTGA 

 

Protein sequence

MNYQKLGVDI LALSGGKQNV SKLTHCATRL RFEFNDNHAV QADAIAKLPG VISVVDRGGQ 
FQVVIGNDVQ ITYRAILNEI GEMNGQRHTG SKEQQKKGGI FSQIISVIST TFTPVIPAIT 
GAGMIKALLA ILKLTGLISA DSTTYRLLDT ISDAAFFFLP VLLAYGASIK FACNPILAMT 
IAGALLHPNL AQLLASGGPI SFIGIPVRLA DYAGSVLPII LTVWIMSYIE QFAEKISPSM 
IKFFTKPMIV LLFTAPLALV VIGPFGILLN DLVASGAAII DGKASWLIPM LMGGLQPFLV 
ITGTAWAMTP IATSQLTRNG FEMINGPGML ASNIAQGAAT LCVAFKTKNK NLKQLASSAG 
FTALLGITEP SLYGVTLKLK KPLIAAMIGG GCAGIYAGLA GLVRYAFVSP GLAALPAFIG 
ENPMNIVHAL ITCAIAIVVT FALTWIMGFD DPVDETDNAQ ADSAQADPHH PAPSVNTTQK 
SQAIAGHTEP QAILSPLSGK LVALNDINDD VFSQGLLGQG VAIIPDNGEV VAPVSGEIIT 
FLESKHAVGI RADNGLELLI HVGLDTVNLN GKHFTGYIKP GDRVTAGDKL ISFDLHEITR 
LGYDPITPVV IINSDDYASV VCITPQPIAQ MDTIINVNA