Gene Pecwa_0587 details

Gene Information

• Locus tag: Pecwa_0587
• ID: 8528952
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: +
• Start bp: 632628
• End bp: 634760
• Gene Length: 2133 bp
• Protein Length: 710 aa
• Translation table: 11
• GC content: 52%
• Product: lipopolysaccharide biosynthesis protein
• Protein accession: YP_003258022
• Protein GI: 261819916

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTCTAT CTATCGTGGA AAATGGCAGA AAACTGGAAA GTACCATCGA TTTCTCCAGA 
TTTGCCCAAG AGATCAAACA GAACGGTTGG AAGATCATGC TGGCCTGCCT GATTGTGGCG 
GTAGTGGCTT ACCCGCTGAT TCGCATGATC ACACCCAAAT ATGTGTCGAC CGCAACGGTA 
CTGCTTAAAG CGCAACAGGA TAACGTTTCG CCTTTGCCGC AGGTCGATGG TTATGATTCC 
ACTCGTAGCG GCTATTACGA AACCCAGTAT GCGTTGATGC AGTCGCGTAT TGTGCTGGAA 
CAAGCCGTGC GGGACATCAA GCTGGACCAA AATCCGGCGT TTAACGGCGA TACAGACAAA 
AACGCGGATA ACCGTGGCGA TGAGCAACAG CGGGTCGATC ACGCGCTGGA TACGATAGTG 
AAAAACCTCA CTATCACCGG TGTTCGCACT ACGCACCTTG CCACTATCTC ATACGAATCG 
GCGTCACCTG AGCTAGCGGC CGACATTGCT AACGGCGCGG CGCAGGCATT TATTGACTAT 
ACGGCCAGGC AAAAGCACCT CAAAACACTG AAAGCCAAAG CGTTGAACCA AAAACAGATG 
GAAGAGGTGT GGCTGCAAGT CGTCGAGCAA CAGGCCACCA TCGACCAGTT TCTGAAGAAG 
GAAGGGCTGC TGACTTTCCG CGGCGTGGAT GGTTTCGAAA CTGAACAACT GGGGATCGTC 
ACCACCAAGT TAGCGGATGC TACCCAGCGT CGCATCAGGG CGGAAACGAA CTACAACAGC 
GTGCGTTTGA ACGCAGGTAC GTCGCTGGAA AACATCATTT CTTTGCCTGA TATTTCTAAT 
CATGCCCAAA TTCAGGATTT GCGCATTGCG CTGATTCAGG CTCGGCGTTC TTTATACGAT 
TTACGAAAAC GCTACGGGCT GAAGCATACC AAAATTTTAG AAGCCGAAGC CCAGGTTCAG 
GCGATTGAAG AGCAGACCCA CACCGTGTTA CTTGAACTGA AAGCGGGGCT GAATAAGCAG 
TATCAGGCGG CGTTGAGGGA TGAAAAATAT TATCAGCAAC TGCTGGAGCA GCAGAAAGCG 
GATTTCCAAA CGCTGGCGTC TAAACGTGAT GAATACAACA ACCTGACCAC CACGCTGGAT 
AAAACAAAAG AGCTGTATAA GGCGCTCTAT CAGCGCACCA AAGAGCAGAC GCTGGCGGGT 
CACTATTTAG AGCCGGACGC GATACTTTAC GACCCTGCCG TGCTGGCTGA CCACCCGTCG 
AAACCCAATA AAGCGATGCT GTTGGTGATG GTTGTCATGC TAACCCTGAT TTTCTCGGTG 
GTTTACTTCA TCGTGAGAGC CGCGGTGGAT AATTCAATCA ACAGTATCAG CCAGATGAAA 
AAGCGCCTGA ATGTGGCGCC GGTGGGGGAA ATTCGCACCT TCGCCAGTGG CGTGGAGCGC 
TCAAAAGTTG TGCGTTTGAT CACTACAGCG CCGCTGGACG TCGATATTGT CCACAGTATG 
CGAACCCACA TTTTGTTATC GCATCCATCC TGCCAGGCCA TTGCCATCAG CTCGGCAGAG 
CATGGCGAAG GGCGATCGTT GCTGGCGCAT TTGCTGGCGA CATCTTTCAG CGCTGACCAA 
AAAACGCTGC TTATCGACCT GGATTTCTTT AACGACGACG GGCTGACGCA AGACCTTGCA 
TCCCCTTCCG CTATTGGTGT GGCGGAACTG CTGCAAGGGC AATCACCGCT GGATGCCGCA 
CTGGTGACAA TCAGTGAAAA TTTAAGCTTC CTGCCGCGTG GCAATGCCAT GATGTCTTCT 
TTACTGATGC TGTCGTCCGA GCATGTCGTG ACGCTGATGG CTGAATTGAG AACACGCTAT 
CAGCGAATTA TCGTTGACGT GGCCGCGGTG AATCAAACGC AGGATGGTCA ACTCATTAGC 
CGGGTAATAG ACGGGGTGGT TTTTGTGCTG AAAGCCGGCG AGTGGCGTGC GGGCGATGTG 
CTTAATGCCA TGGAGAAAGT GAATCAGCAC CGCGCGGTGC TGATTGGCGC GGTAATGAAT 
CAGGTTGCGG ATAAAAACCT CGAAACCAAA GAGGGGATAC GTTCCCTGAA CCATCGCATG 
AATGCGCTAA TCGACAGTAC CGGTCACCTG TGA 

 

Protein sequence

MSLSIVENGR KLESTIDFSR FAQEIKQNGW KIMLACLIVA VVAYPLIRMI TPKYVSTATV 
LLKAQQDNVS PLPQVDGYDS TRSGYYETQY ALMQSRIVLE QAVRDIKLDQ NPAFNGDTDK 
NADNRGDEQQ RVDHALDTIV KNLTITGVRT THLATISYES ASPELAADIA NGAAQAFIDY 
TARQKHLKTL KAKALNQKQM EEVWLQVVEQ QATIDQFLKK EGLLTFRGVD GFETEQLGIV 
TTKLADATQR RIRAETNYNS VRLNAGTSLE NIISLPDISN HAQIQDLRIA LIQARRSLYD 
LRKRYGLKHT KILEAEAQVQ AIEEQTHTVL LELKAGLNKQ YQAALRDEKY YQQLLEQQKA 
DFQTLASKRD EYNNLTTTLD KTKELYKALY QRTKEQTLAG HYLEPDAILY DPAVLADHPS 
KPNKAMLLVM VVMLTLIFSV VYFIVRAAVD NSINSISQMK KRLNVAPVGE IRTFASGVER 
SKVVRLITTA PLDVDIVHSM RTHILLSHPS CQAIAISSAE HGEGRSLLAH LLATSFSADQ 
KTLLIDLDFF NDDGLTQDLA SPSAIGVAEL LQGQSPLDAA LVTISENLSF LPRGNAMMSS 
LLMLSSEHVV TLMAELRTRY QRIIVDVAAV NQTQDGQLIS RVIDGVVFVL KAGEWRAGDV 
LNAMEKVNQH RAVLIGAVMN QVADKNLETK EGIRSLNHRM NALIDSTGHL