| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_0564 |
|---|
| Symbol | |
|---|
| ID | 8528929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 599703 |
|---|
| End bp | 601211 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_003257999 |
|---|
| Protein GI | 261819893 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAAGG GTCGGAAACT ATTTAGCCTT AGCGCCATCG TGCTAGCCGC CAGCGGCTGT
GCCGTAACCA CCCAGCCGAT CAGCAAGGTC GAAAGCGGGC AGCGTAGCCA GCAGGACCGA
GTCGCCATGT TCAGCCAGCA GGAGCCGGTT ACGGCACCGA TCACGCTGTA TGATGCTATG
GCGCGTGCAC TGAAATACAA CCTCGAATCA CGCTTAAAGG TGATGGAATA TGCGCTGAGC
CAGCAACAGG TGGAGCTGGC ACGTTACGAT ATGCTGCCAA AGCTGGCGGC ATCGGCAGGC
TACGTGGGGC GTAACAATAT GAGCGCCTCC AGTAGCCGCA GCGTAGAAAC GGGACGTACC
TCTCTGGAAC CGTCAACCTC ACAGGATCGC GACCGCGATG TAGCCGATCT GACCATGGTG
TGGAACGTGC TCGACTTTGG CGTCAGCTAC GTTACCGCCC AGCAAAAATC GGATCAGCGC
TGGATAGCCG AAGAGCGTAA ACGTAAGGTG GTGCACACCA TCCTGCAAGA CGTGCGCTCC
GCCTACTGGC GCGCCGTGGC TGCCGAGCGT CTGCTGGGGC AGATTGACAG CCTGATCGCC
CGCGTTAACG CCGCACGCGA CGCGAGCGAG CGCATGTCAT CGCAGCAGAT TGGCGATCCG
ATTGAATCAC TAAGCTACCG GCGCGCGCTG ATCGACGCCA CGCGCCAGTT GGAAGAGCAG
CGCCGTGCGC TGTCTCTAGC CAAGACGGAG TTAGCAACCC TGATGAATCT GCCGCTGGAT
ACGGCCTACA AGCTCGCGTT ACCACAGAGC GGCGATGAAG TCGTACCGCA GTTGAATGTC
GATGTGAGGG TACTGGAAGA AACCGCACTG GTCAGCCGCC CGGAATTGCG CGAACAGGAT
TACCAGGTAA GAATTCATGC CGCTGAAACC CGCAAGGCGC TGCTGCGCAT GCTACCCGGC
GTAGAAATTA GCGCAGGCGG CCATTATGAC AGCAACTCCT TCCTGGTTAA CAACAGTTGG
GCTGACGTCG GCGTGAAAGC GACCTGGAAC CTGTTTAACC TGCTGTCCGG CCCAGCCGCA
CGTAAAGTGG CACAGGCTAA CGAATCCGTA TCGGAAGTAC AGCGTCAGGC GATGTCGCTG
GCGATTATGG CGCAGTTATA CATCGCCCGA GCCAACTTCA ATGAGGCACA GCGACAGTAT
AAAACCAGTG CAGAATTGCG CGATCTCGAT ACCCAAATCG TCGAACAGCT ACGAAACCGC
TATAAGGCCA ACAGCATCGG CGAATTGCAA TTGATTCAAG GTGAGCTAAA CGCCCTCAAC
GCCAGCCTGC GTCAGGATCT GGCCTATGCA GAACTACGTA ATACCTACGG CCAGATATTC
TCGACGATCG GACTGGATTT GCTACCGAAA TCATTGCCAT CCAATAGCCT TGTGGATATC
AGCCAGTCAC TGCGTCAATC TGACGCCAAC TGGCAGCAGG GCAAAATCAG TACCTTACAA
TCGTTCTGA
|
|---|
| Protein sequence | MLKGRKLFSL SAIVLAASGC AVTTQPISKV ESGQRSQQDR VAMFSQQEPV TAPITLYDAM
ARALKYNLES RLKVMEYALS QQQVELARYD MLPKLAASAG YVGRNNMSAS SSRSVETGRT
SLEPSTSQDR DRDVADLTMV WNVLDFGVSY VTAQQKSDQR WIAEERKRKV VHTILQDVRS
AYWRAVAAER LLGQIDSLIA RVNAARDASE RMSSQQIGDP IESLSYRRAL IDATRQLEEQ
RRALSLAKTE LATLMNLPLD TAYKLALPQS GDEVVPQLNV DVRVLEETAL VSRPELREQD
YQVRIHAAET RKALLRMLPG VEISAGGHYD SNSFLVNNSW ADVGVKATWN LFNLLSGPAA
RKVAQANESV SEVQRQAMSL AIMAQLYIAR ANFNEAQRQY KTSAELRDLD TQIVEQLRNR
YKANSIGELQ LIQGELNALN ASLRQDLAYA ELRNTYGQIF STIGLDLLPK SLPSNSLVDI
SQSLRQSDAN WQQGKISTLQ SF
|
|---|
| |