Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_0283 |
Symbol | |
ID | 8528645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | - |
Start bp | 317167 |
End bp | 317739 |
Gene Length | 573 bp |
Protein Length | 190 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | |
Product | lipopolysaccharide transport periplasmic protein LptA |
Protein accession | YP_003257743 |
Protein GI | 261819637 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.24235 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCCA AAACCAATAA TCTGATGCGT AACACCCTGA TCGCCAGCTC GCTGTTCGCC GTCAGCGTTT CCGCCTTTGC CGTCACGGGC GATAGCAACC AACCGATTCG CATTGATTCA GCACAGCAAT CTCTGGACAT GCAGGGCAAC ACCGTGACGT TCACGGGCAA TGTTGTCGTG AAGCAAGGGA CGATTGAAGT GAAAGCCGAC AAGGTTGTCG TGACGCGCCC ACAGGGCACG CAAGGCAGCG AAGTAGTGGA AGGTTACGGT AACCCTGTGA CGTTCTACCA GATGCAGGAC AACGGCAAAC CAGTAAAAGG CCACGCGCAA AAAATCCGTT ACGAGCTGGC TACTGATTTT CTGGTACTGA CAGGCAATGC CTATCTGGAA CAGCAGGACA GCAATGTAAA AGGCGATCGC ATCACCTACC TGGTGAAACA GCAGCAGATG GAAGCGACCA GCGATAAAGG AAAACGCGTG ACGACGGTGT TAGTCCCCTC TCAGCTTCAG GAGAAAGAGA AAAAGAGCCA GCCTTCTCGT TCTCAACAAT CGCAACCACG GGTCACTGAA TAA
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Protein sequence | MKSKTNNLMR NTLIASSLFA VSVSAFAVTG DSNQPIRIDS AQQSLDMQGN TVTFTGNVVV KQGTIEVKAD KVVVTRPQGT QGSEVVEGYG NPVTFYQMQD NGKPVKGHAQ KIRYELATDF LVLTGNAYLE QQDSNVKGDR ITYLVKQQQM EATSDKGKRV TTVLVPSQLQ EKEKKSQPSR SQQSQPRVTE
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