Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_0210 |
Symbol | rpoB |
ID | 8528568 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | + |
Start bp | 230846 |
End bp | 234874 |
Gene Length | 4029 bp |
Protein Length | 1342 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_003257672 |
Protein GI | 261819566 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0404668 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTTACT CCTATACCGA GAAAAAACGT ATTCGTAAGG ATTTTGGTAA ACGTCCACAA GTTTTGGACA TACCTTATCT CCTTTCTATC CAACTTGACT CGTTCCAGAA GTTTATCGAG CAAGACCCGG AAGGCCAGCA CGGTTTGGAA GCTGCATTCC GTTCAGTTTT CCCCATAAAA AGCTATAGCG GTAATTCAGA GCTGCAATAC GTTAGCTATC GCTTAGGCGA GCCAGTATTT GACGTTAAAG AATGTCAGAT CCGCGGTGTG ACGTTCTCTG CGCCGCTACG CGTTAAACTG CGCCTGGTGA TCTACGAGCG CGAAGCGCCT GAAGGCACCG TTAAAGACAT CAAAGAACAA GAAGTTTACA TGGGCGAAAT TCCGCTCATG ACTGATAACG GTACCTTCGT GATCAACGGT ACTGAGCGCG TAATCGTGTC TCAGTTGCAC CGTAGTCCAG GTGTGTTCTT CGATAGCGAC AAAGGTAAAA CCCACTCTTC AGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT GGTTCCTGGC TGGATTTCGA ATTTGATCCG AAGGATAACC TATTTGTCCG TATCGACCGT CGCCGCAAAT TGCCTGCGAC TATTATCCTG CGCGCGCTGG GTTACTCTAC CGAACAGATT CTCGATCTTT TCTTCGATAA AATTGTCTAT GAAATCAATG GCAATAAATT GCAGATGGAT CTGGTTCCTG AGCGCCTGCG TGGTGAAACT GCATCGTTTG ATATCGAAGC GAACGGTAAA GTTTATATCG AAAAAGGTCG CCGCATCACT GCACGTCATA TCCGTCAGCT AGAGAAAGAC GATATTGAGC GCATTGAAGT GCCTGTTGAA TATATTGCTG GCAAAGTACT GTCCAAAGAT TATATCGACG AGAGCACTGG TGAACTGATC GGCGCAGCCA ACATGGAGCT GTCGCTGGAT CTGCTGGCTA AACTGAGTCA GTCTGGTCAC AAGCGTATTG AGACCCTGTT CACCAACGAT CTTGATCATG GTGCATACAT GTCTGAAACC GTGCGCGTCG ATCCGTCAAG CGATCGTCTG AGCGCGCTGG TTGAAATCTA TCGCATGATG CGTCCTGGTG AGCCACCAAC GCGTGAAGCA GCAGAAACGC TGTTCGAGAA CCTGTTCTTC TCTGAAGACC GCTACGATCT GTCTGCGGTT GGCCGTATGA AGTTCAACCG TTCTTTGTTG CGTGACGAGA TCGAAGGTTC CGGTATCCTG AGCAAAGATG ACATCATCGA AGTGATGAAG AAGCTCATTG ATATCCGTAA CGGCAAAGGC GAAGTGGATG ATATCGACCA CCTCGGCAAC CGTCGTATTC GTTCCGTTGG CGAAATGGCA GAAAACCAAT TCCGCGTTGG TCTGGTGCGT GTAGAGCGTG CTGTAAAAGA GCGTCTGTCT CTGGGCGACC TCGATACGCT GATGCCACAA GACATGATTA ACGCCAAGCC GATTTCGGCT GCCGTGAAAG AGTTTTTCGG TTCTAGCCAA CTGTCACAGT TTATGGACCA GAACAACCCA CTGTCTGAGA TTACGCACAA ACGTCGTATC TCTGCATTGG GCCCAGGTGG TCTGACGCGC GAACGTGCTG GCTTTGAAGT TCGTGACGTA CACCCGACGC ACTATGGTCG TGTTTGTCCT ATCGAAACGC CGGAAGGTCC AAACATCGGT CTGATCAACT CCCTGTCCGT TTATGCACAA ACCAACGAAT ACGGTTTCCT TGAAACCCCA TATCGTCGCG TGCGTGAAAA CGTGGTTACG GATGAGATCC ATTACCTGTC TGCGATTGAA GAAGGTAACT TCGTTATCGC CCAGGCAAAC ACCAATTTGG ACGAAGAAGG CCGCTTCATC GACGAACTGG TTACCTGCCG TAACAAAGGC GAGTCCAGCT TGTTCAGCCG CGATCAGGTT GAATACATGG ACGTTTCCAC ACAGCAGGTG GTTTCCGTCG GTGCATCCTT GATTCCGTTC TTGGAACACG ATGACGCCAA CCGTGCCCTG ATGGGTGCGA ACATGCAACG TCAGGCTGTT CCAACTTTGC GCGCTGATAA GCCGCTGGTT GGTACGGGTA TGGAACGTGC TGTTGCGGTT GACTCCGGTG TAACTGCCGT AGCCAAACGT GGTGGTACAG TACAGTACGT GGATGCATCT CGCATTGTAA TCCGTGTTAA TGACGATGAA ATGTATCCGG GCGAAGCCGG GATCGACATC TATAACCTGA CCAAATATAC CCGTTCTAAC CAGAACACCT GCATCAGCCA GATGCCGTGT GTGTCTTTGG GTGAGCCGGT AGAACGTGGT GATGTTCTGG CAGATGGTCC GTCCACCGAT TTGGGTGAGC TGGCGCTGGG TCAGAACATG CGCGTGGCAT TCATGCCATG GAATGGTTAC AACTTCGAAG ACTCCATCCT CGTTTCCGAG CGTGTGGTTC AGGAGGATCG CTTTACGACC ATCCACATTC AGGAACTGGC CTGTGTGTCT CGTGACACCA AGTTAGGGCC TGAGGAAATT ACTGCGGACA TCCCTAACGT GGGTGAAGCA GCACTTTCCA AACTGGATGA GTCTGGCATC GTTTATATCG GTGCAGAAGT CACCGGCGGT GACATTCTGG TTGGTAAGGT AACGCCGAAA GGTGAAACCC AACTGACGCC AGAGGAAAAA CTGCTGCGTG CGATCTTCGG TGAGAAAGCG TCTGACGTTA AAGACTCTTC TCTGCGTGTA CCAAACGGTG TTTCCGGTAC GATTATCGAC GTACAGGTCT TTACCCGCGA TGGCGTGGAA AAAGACAAAC GTGCGTTGGA AATCGAAGAA ATGCAACTGA AGCAGGCGAA GAAAGACCTG ACTGAAGAGT TGCAGATTCT GGAAGCGGGT CTGTTTGGAC GTATCCACGC AGTGCTGGTT TCTGGCGGCG TAGAAGCTGA CAAACTGGAC AAACTGCCGC GCGAGCGTTG GTTGGAACTG GGTCTGACTG ATGAAGAGAA ACAGAATCAG TTGGAACAGC TTGCAGAACA GTATGATGAG CTGAAGCACG AGTTTGAGAA AAAACTCGAA GCGAAGCGCC GTAAAATCAC CCAAGGCGAT GATCTGGCAC CGGGCGTGCT GAAAATCGTT AAGGTTTATC TGGCTGTTAA GCGTCAGATT CAACCGGGTG ACAAGATGGC AGGTCGTCAC GGGAACAAAG GTGTTATCTC CAAGATCAAC CCGATCGAAG ATATGCCTTA CGATGAGAAC GGTACGCCGG TCGATATCGT ACTGAACCCG CTGGGCGTAC CTTCACGTAT GAACATTGGT CAGATTCTGG AAACCCACTT GGGTATGGCT GCAAAAGGTA TCGGCGAGAA AATCAACGCC ATGCTCAAAC AGCACGAAGA AGTGACTAAG CTGCGTGAAT TTATCCAGAG AGCCTACGAT CTGGGCGACG ATGTGCGTCA AAAAGTCGAC CTGAGTACTT TCTCCGACGA AGAAGTTATG CGTCTGGCTG AAAACCTGAA GAAAGGTATG CCAATTGCAA CGCCAGTATT CGACGGTGCA AAAGAGAAAG AAATCAAGGA ACTGTTGCAG ATGGGCGGTA TCCCTACCTC CGGTCAGATT ACTCTGTACG ATGGACGTAC TGGTGAGCAA TTTGAGCGTC AGGTTACAGT GGGCTACATG TACATGCTGA AACTGAACCA CTTGGTTGAC GATAAGATGC ATGCCCGTTC CACCGGTTCT TATAGCCTGG TTACTCAGCA GCCGCTGGGT GGTAAGGCGC AGTTCGGTGG TCAACGCTTC GGTGAGATGG AAGTGTGGGC GCTGGAAGCT TATGGTGCAG CTTATACCCT GCAAGAAATG TTGACCGTTA AGTCTGATGA CGTGAACGGC CGTACCAAGA TGTATAAGAA CATCGTGGAT GGCAATCATC AGATGGAGCC AGGCATGCCG GAATCCTTCA ACGTATTGTT GAAAGAAATC CGCTCGCTGG GTATCAACAT CGAGCTGGAA GAAAAGTAA
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Protein sequence | MVYSYTEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFQKFIE QDPEGQHGLE AAFRSVFPIK SYSGNSELQY VSYRLGEPVF DVKECQIRGV TFSAPLRVKL RLVIYEREAP EGTVKDIKEQ EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARIIPYR GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALGYSTEQI LDLFFDKIVY EINGNKLQMD LVPERLRGET ASFDIEANGK VYIEKGRRIT ARHIRQLEKD DIERIEVPVE YIAGKVLSKD YIDESTGELI GAANMELSLD LLAKLSQSGH KRIETLFTND LDHGAYMSET VRVDPSSDRL SALVEIYRMM RPGEPPTREA AETLFENLFF SEDRYDLSAV GRMKFNRSLL RDEIEGSGIL SKDDIIEVMK KLIDIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS LGDLDTLMPQ DMINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEITHKRRI SALGPGGLTR ERAGFEVRDV HPTHYGRVCP IETPEGPNIG LINSLSVYAQ TNEYGFLETP YRRVRENVVT DEIHYLSAIE EGNFVIAQAN TNLDEEGRFI DELVTCRNKG ESSLFSRDQV EYMDVSTQQV VSVGASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGMERAVAV DSGVTAVAKR GGTVQYVDAS RIVIRVNDDE MYPGEAGIDI YNLTKYTRSN QNTCISQMPC VSLGEPVERG DVLADGPSTD LGELALGQNM RVAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELACVS RDTKLGPEEI TADIPNVGEA ALSKLDESGI VYIGAEVTGG DILVGKVTPK GETQLTPEEK LLRAIFGEKA SDVKDSSLRV PNGVSGTIID VQVFTRDGVE KDKRALEIEE MQLKQAKKDL TEELQILEAG LFGRIHAVLV SGGVEADKLD KLPRERWLEL GLTDEEKQNQ LEQLAEQYDE LKHEFEKKLE AKRRKITQGD DLAPGVLKIV KVYLAVKRQI QPGDKMAGRH GNKGVISKIN PIEDMPYDEN GTPVDIVLNP LGVPSRMNIG QILETHLGMA AKGIGEKINA MLKQHEEVTK LREFIQRAYD LGDDVRQKVD LSTFSDEEVM RLAENLKKGM PIATPVFDGA KEKEIKELLQ MGGIPTSGQI TLYDGRTGEQ FERQVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNIVD GNHQMEPGMP ESFNVLLKEI RSLGINIELE EK
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