Gene GYMC61_0048 details

Gene Information

• Locus tag: GYMC61_0048
• ID: 8523830
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacillus sp. Y412MC61
• Kingdom: Bacteria
• Replicon accession: NC_013411
• Strand: +
• Start bp: 57627
• End bp: 61160
• Gene Length: 3534 bp
• Protein Length: 1177 aa
• Translation table: 11
• GC content: 52%
• Product: transcription-repair coupling factor
• Protein accession: YP_003251230
• Protein GI: 261417548

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCTTTCGT TGCATCGCTA TTTAGCTGAA AACCAAGATG TCCGTACGAT CATTGAAGGG 
CTCCATGTCC GTTTGAAGGA ACAGCTTGTC GCCGGGCTGT CCGGATCGGC CCGGTCTGTT 
TTTATTTCCA CGCTTTACAA GGAGACAGGC CGGCCGCTGT TAGTCGTGTC TCACAATTTG 
TTTCAGGCGC AAAAAATGTA TGACGATCTC GTTTCGTTGC TCGGGCCGGA AGACGTGTTC 
CTTTATTCAG TGAACGAAGT GATCGCCGCT GAGATGGCGG TCGCCAGCCC GGAGCTGAAG 
GCACAGCGCC TAGAGATTAT GAACCATTGG GCGCAAGGCG GAAAAGGAGT TGTCGTCTGC 
CCGGTCGCCG GCTTGCGGCG TTTGTTGCCG CCGCCGTCGC TTTGGAAGCA GTATTTGTTC 
ACCTTCTTCG TTGGACAAGA GTTCGATGTA GAACGTTGTA AACAGAAGTT TGTGCAAATG 
GGGTACAAAC GGGTCGGCAC CGTTTCCGCC CCTGGAGAGT TCAGCGTCCG CGGCGGCATC 
ATCGACATTT ATCCATTGAC CGCTGAGCTT CCGTACCGCA TCGAGCTGTT TGATACGGAA 
ATCGAATCGA TTCGGACGTT CACTCCTGAC GACCAACGTT CGCAAGGGCA AATCGAGCGC 
ATCATGATCG GGCCGGCCGA TGAAATCATT CTCGATGGCG AGACGCGGCG CCGAGGAATC 
GAGCGGATTG AAGCGGGGCT TGCGTCGAGT TTGGAAACGA TGAAAGATGA GGCCGCCAAA 
CAGCGGATGT ATGAACATAT TCACGCTGAG CTTGAGCAAT TGCGCGAGGG GCAGGAAATC 
GAGCAACAAT ATAAATATAT GTCCCTTTTT TATGAAAAGG TTGCGAGTTT GCTAGATTAC 
CTGCCAGAAG ACGGCGTGCT GCTCATGGAT GAAATGAGCC GGCTGCAAGA GGCGGCGGAA 
CGGTTGGACC GCGAAGAGGC GGAATGGTAT ACGAGTTTGC TTGACGGCGG GAAAATGATT 
CATGGCGTGC CGCTTTCGCA TTCGTTTTCT GAATTATTGC AAAAACATCG ATTCCAGCGG 
GTATACTTAT CGTTGTTTTT GCGCCATGTT CCGTATGCCC ACCCACAAAA CGTCGTCAAT 
ATTACGTGCA AACAGATGCA AAACTTCCAT GGGCAAATGG CGCTTCTTCA ATCCGAAGTC 
GAGCGGTGGG AAAAGGCAAA CTATGCGGTC GTCTTTTTGG CGCCGAATGC AGAGCGGGTG 
AAAAAGCTGC AATCATTGCT TCAAGATTAT GAGATTGACG CGCTGCCGCT CGCGCGCGAT 
GCGGCTTTGC TGCATGGCAA ATGCCAGCTC CTTGAAGGAG ATTTAAATAC CGGGTTTGAA 
TTGCCGTTGC AAAAAATTGC CGTCATCACA GAAGAAGAGC TGTTCAAAAA ACGGGTCAAA 
CGCCCGGTGC GCCGGCAAAA GCTGTCCAAC GCCGAGCGGA TCAAAAGCTA CGCCGAATTG 
CAAGTCGGCG ACTACGTCGT CCATGTCAAC CATGGCATCG GGAAATATTT AGGCATCGAG 
ACGTTAGAAA TCAACGGGGT GCATAAAGAC TATATTCATA TCCAGTACCA AGGCGGCGAT 
ACGCTGTATG TTCCGGTCGA CCAAATCGAT CAAGTGCAAA AATACGTCGG CTCGGAAGGG 
AAAGAACCAA AAATTTATAA ACTCGGCGGT TCGGAATGGA AAAAGGTCAA AAAGAAAGTG 
GAATCATCCG TCCAGGATAT TGCTGAAGAT TTAATCAAGC TGTACGCCGA GCGTGAGGCA 
AGCAAAGGAT ATGCGTTTTC GCCGGACACC GAGATGCAGC GCGAATTTGA AGCGGCGTTT 
CCGTATCAAG AGACGGAAGA TCAGCTTCGG TCGATTGAGG AAATTAAGCG TGATATGGAG 
AGCGACAAAC CGATGGACCG CCTCCTTTGC GGCGACGTCG GCTACGGGAA GACGGAAGTG 
GCGTTGCGGG CGGCGTTTAA AGCCATTATG GACGGCAAAC AAGTGGCCTT TCTTGTGCCG 
ACGACGATCC TAGCCCAACA GCATTACGAA ACGGTGCGCG AACGGTTTCA AGGGTTCCCA 
ATCAACGTCG GACTGTTGAA CCGCTTCCGG ACGAAAAAGC AACAAGCCGA GATCATCAAA 
GGGCTAAAAG ATGGGACGAT CGATATGGTC ATCGGAACGC ATCGGCTGCT GTCGAAAGAC 
GTGAAGTTTA AAGATTTAGG CTTGCTCATT ATCGACGAGG AGCAACGGTT TGGCGTGGCG 
CATAAAGAAA AAATCAAGCA GCTGAAGGCG AACATCGACG TGCTCACCTT AACGGCGACG 
CCGATTCCGC GTACGTTGCA TATGTCGATG ATTGGCGTGC GCGATTTGTC GATCATCGAG 
ACGCCGCCTG AAAACCGATT CCCGGTGCAA ACGTATGTCA TGGAATATAC GCCCGAACTC 
GTCAAAGAGG CGATTGAACG TGAGCTCGCC CGCGACGGGC AGGTGTTTTT CCTTTACAAC 
CATATTGAAG ACATCGATTT GAAAGCGGAA GAAATCGCAC AGCTTGTCCC GGAAGCGCGC 
GTCACTTACG TGCATGGCCG CATGTCGGAA ACGGAGCTCG AATCGACGAT TTTGGCGTTT 
TTGGAAGGGC AATACGATGT GCTGGTGACG ACGACGATCA TTGAAACGGG CATCGATATT 
CCGAATGTCA ACACGCTCAT CGTCTATGAC GCCGACCGGA TGGGATTGTC GCAGCTGTAC 
CAGCTGCGCG GGCGCGTCGG CCGCTCCAAC CGCGTCGCTT ATGCGTATTT CACCTATCGG 
AAAGATAAAG TGCTCAATGA AGCGGCAGAA AAGCGGCTGC AAGCCATTAA AGAGTTTACC 
GAGCTCGGCT CTGGTTTTAA AATTGCCATG CGCGATTTGT CGATCCGCGG CGCGGGCAAC 
ATTCTCGGCG CCGAACAGCA CGGCTTTATC GACTCGGTCG GATTCGATTT GTATTCGCAA 
ATGTTGAAAG AAGCGATCGA GAAACGGCGC GGCATCAAGC GAGAAGACGA GCAGCCGGAT 
GTCGTCATCG ATGTCGAAGT CGACGCCTAT ATTCCGAGCA CATACATTGC AGACGAGTTG 
CAAAAGATCG AGATGTACAA GCGATTTAAG GCAGTGGAGA CGCTCGAAGA CGTTGAGGCG 
CTGCGTGAGG AAATGGTCGA CCGCTTCGGC GATTATCCAG ATGAAGTTGC GTATTTGTTC 
CAAATTGCTG AGTTGAAGGT GTTGGCCAAG CAGCTTGGCG TCGAATCGAT GAAGCAACAT 
AAGCAGCAAA TTGACATCTT GTTTACTGAA CAGGCATCGA AAACGGTGGA AATCCAGCGT 
CTATCTGACA TCGGACGCCG GCATGGCCGC TTATTCGGGT TTGGCATGGA CGGAGCGAAG 
CTGAAAATTG TGCTCTATAT CAAGGACATG AAGCCGCACG AGTGGCTGAT GATTTTAGAG 
GAGACGCTGC GGCGGCTGTC CGGGGTGGAA AAAGAGAAGT CGGTGACGGC ATAA 

 

Protein sequence

MLSLHRYLAE NQDVRTIIEG LHVRLKEQLV AGLSGSARSV FISTLYKETG RPLLVVSHNL 
FQAQKMYDDL VSLLGPEDVF LYSVNEVIAA EMAVASPELK AQRLEIMNHW AQGGKGVVVC 
PVAGLRRLLP PPSLWKQYLF TFFVGQEFDV ERCKQKFVQM GYKRVGTVSA PGEFSVRGGI 
IDIYPLTAEL PYRIELFDTE IESIRTFTPD DQRSQGQIER IMIGPADEII LDGETRRRGI 
ERIEAGLASS LETMKDEAAK QRMYEHIHAE LEQLREGQEI EQQYKYMSLF YEKVASLLDY 
LPEDGVLLMD EMSRLQEAAE RLDREEAEWY TSLLDGGKMI HGVPLSHSFS ELLQKHRFQR 
VYLSLFLRHV PYAHPQNVVN ITCKQMQNFH GQMALLQSEV ERWEKANYAV VFLAPNAERV 
KKLQSLLQDY EIDALPLARD AALLHGKCQL LEGDLNTGFE LPLQKIAVIT EEELFKKRVK 
RPVRRQKLSN AERIKSYAEL QVGDYVVHVN HGIGKYLGIE TLEINGVHKD YIHIQYQGGD 
TLYVPVDQID QVQKYVGSEG KEPKIYKLGG SEWKKVKKKV ESSVQDIAED LIKLYAEREA 
SKGYAFSPDT EMQREFEAAF PYQETEDQLR SIEEIKRDME SDKPMDRLLC GDVGYGKTEV 
ALRAAFKAIM DGKQVAFLVP TTILAQQHYE TVRERFQGFP INVGLLNRFR TKKQQAEIIK 
GLKDGTIDMV IGTHRLLSKD VKFKDLGLLI IDEEQRFGVA HKEKIKQLKA NIDVLTLTAT 
PIPRTLHMSM IGVRDLSIIE TPPENRFPVQ TYVMEYTPEL VKEAIERELA RDGQVFFLYN 
HIEDIDLKAE EIAQLVPEAR VTYVHGRMSE TELESTILAF LEGQYDVLVT TTIIETGIDI 
PNVNTLIVYD ADRMGLSQLY QLRGRVGRSN RVAYAYFTYR KDKVLNEAAE KRLQAIKEFT 
ELGSGFKIAM RDLSIRGAGN ILGAEQHGFI DSVGFDLYSQ MLKEAIEKRR GIKREDEQPD 
VVIDVEVDAY IPSTYIADEL QKIEMYKRFK AVETLEDVEA LREEMVDRFG DYPDEVAYLF 
QIAELKVLAK QLGVESMKQH KQQIDILFTE QASKTVEIQR LSDIGRRHGR LFGFGMDGAK 
LKIVLYIKDM KPHEWLMILE ETLRRLSGVE KEKSVTA