| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_2121 |
|---|
| Symbol | |
|---|
| ID | 8492130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ammonifex degensii KC4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013385 |
|---|
| Strand | - |
|---|
| Start bp | 2106863 |
|---|
| End bp | 2108287 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 646360110 |
|---|
| Product | Orn/Lys/Arg decarboxylase major region |
|---|
| Protein accession | YP_003240048 |
|---|
| Protein GI | 260893951 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.06026 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGCAA GAAAGCAGCC GCTAGTGGAG GCTCTTAGGC GCTACTGCCG ATCTGCTCCG
CTTCCCTTCC ACACTCCCGG GCATTTACAG GGAAGGGCGG CCCCGCCAAG CCTACGGCGC
TGGTGGGGTC GAGCTGTTTT TGCCGCCGAC TTGACCGAAG TTCCGGGCCT GGGTGATCTT
TACACCCCTT CCGGGCCGGT GGCGGAGGCC CAAGAGTTGG CGGCGGCTTG GGCCGGTGCT
CGGTATTCCT TCTTTCTGGT CAACGGGAGT ACGGCAGGAG TAATGGCCCT TTTCCTGGCC
GCCCTCCGTC CAGGAGACAA GATACTCCTG CCCCGGGCGG TTCACCGCTC AGCGGTGGCG
GCCCTTTGCC TTTCCGGCGC CGAGCCCGTA TTTATCCCTT CGTCCTTCTC GGAGGAGTGG
GGGATCCTCC TCCCTCCTCC TCCTTCGGCC TACGCGGAGC GGCTAGCTCT TGAACCGGAG
GCTCGAGCTC TTTTCTGCCT CTACCCCGAT TATTATGGTC TAGCGATTGA GCTGGAGCTC
CTGGCCGAGT TGGCGCGAAA AAGGGGGATT CCCCTTCTGG TGGACGCGGC CCACGGGACC
CTTTTCGGTC TGCACCCCTC CCTTCCCCCG AAGGCGCTGG CCTGCGGGGC CGAGGCGGCG
GTAGAAAGCG CCCACAAACG GTTAAGCGGG CTTACCCAGA CGGCCTGGCT GCACCTGCGG
GGAGAGAAGC TCGGGGAGGC GGAGGTGCGG GAAGCCCTCA TGCTGCTTCA GACGAGCAGT
CCCTCTTACC TGCTCATGGC CTCCCTGGAC GCCGCGCGCC AGTACTGGTC CGGTGCGAAA
GGAGAGAAGC TCATTTCCCG CCTACTAGAG TTGGCGGCGG AGGCGGCGGA CGAGCTTTCC
GCGCTGGAAG GGGTAAAGGT CTTGCGTGAA CTTCCGGGGT ATCGCCTAGA TCCTACCCGG
CTGGTGCTCA ATTTTACCGC AGCGGGGCTT AGTGGTTTAG AGGTGGCGCG GCGCCTGGAG
AGTCTCGGGG TAGTGGTGGA GATGGCCGAC TTCGCCAACG TGCTCCTGCT CCCGAGCCCC
GGGCACACGC GGCGGGATAT CCGGCGGCTG GTGGAGGCGG TGGCTAAAAT TCTTGGCCGG
ACCGGAAGGC GTAAAAGAAC CACCATCCCT CGATTCCCCT TCTCCCCTTT ACATCTTCCT
CCTCGTGAGG CTTGGCTGGC ACCGAGCACA TGGGTGCCAC TAAGGGAGGC AGTGGGGCGG
GTGGCTTCGG GGCTAGTCAT CGTTTCCCCT CCCGGGATTC CCCTCCTTTT GCCAGGGGAA
GAAGTGACGC CGGAGGTGGA GGAGTACGTG GTAAAGGTGC GTGCGGCGGG GGCCAGCCTG
CAGGGAGTGA CGGGAGATGA GCTCAGAGTG AAGGTGGTAA AATAG
|
|---|
| Protein sequence | MRARKQPLVE ALRRYCRSAP LPFHTPGHLQ GRAAPPSLRR WWGRAVFAAD LTEVPGLGDL
YTPSGPVAEA QELAAAWAGA RYSFFLVNGS TAGVMALFLA ALRPGDKILL PRAVHRSAVA
ALCLSGAEPV FIPSSFSEEW GILLPPPPSA YAERLALEPE ARALFCLYPD YYGLAIELEL
LAELARKRGI PLLVDAAHGT LFGLHPSLPP KALACGAEAA VESAHKRLSG LTQTAWLHLR
GEKLGEAEVR EALMLLQTSS PSYLLMASLD AARQYWSGAK GEKLISRLLE LAAEAADELS
ALEGVKVLRE LPGYRLDPTR LVLNFTAAGL SGLEVARRLE SLGVVVEMAD FANVLLLPSP
GHTRRDIRRL VEAVAKILGR TGRRKRTTIP RFPFSPLHLP PREAWLAPST WVPLREAVGR
VASGLVIVSP PGIPLLLPGE EVTPEVEEYV VKVRAAGASL QGVTGDELRV KVVK
|
|---|
| |