| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_2072 |
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| Symbol | |
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| ID | 8492081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ammonifex degensii KC4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013385 |
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| Strand | - |
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| Start bp | 2065319 |
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| End bp | 2068690 |
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| Gene Length | 3372 bp |
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| Protein Length | 1123 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 646360062 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003240000 |
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| Protein GI | 260893903 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGTTCC TGCTGAAACT TTTTTGTGAG GCACCTTCGG TACAAAAAAT TAAGACCGCC
CTGCAGGCAG GCAAGCCCCA GGCGGTCTAC GGGCTGAGCG GCACGGCTCT AAGTTTCCTT
CTGGCCGCTA CCTTTCGCGA GTGGCCGGCA GGAATGGTGA TCGTGCCGGA CGAGGAAACG
GCCCTGACCC TGGCGGCGGA GCTCAAGCTC CTGTGGGGGG AGGAGGTTTT TGTTTTCTTA
CCTCGGGAGA TCTTTGGGTT GGGGCCTAGC CTTCCTTCTG CTTTTGTCCC CCGCCAGCGG
CTCCTATCCC TGGCGGCACT TGCTCGCCGG CAGGGGGTAG TCGTGGCCAC CGCGCCGGCA
CTCCTGCAGG GGCTGGCTCC GCCGGAAAAC TTTTCTCCCC ACTGCTGGGA GCTGTGGAAG
GGAGAAGAGC TTTCCCCGGA GGAACTGGGG CAGAGGCTGG TCGAGACCGG TTACGTCCGC
GTTTCAGCGG TAGAGGTTCC CGGGCAGTTT GCCCGGCGCG GGGGAATTGT GGACTTCTTT
CCCCCTTCCT CCCCCCTTCC GGTCCGGGTG GAGTTTGACG GGGACGAGAT AGCCCGCATC
GCTACTTTCG ACCCTGCTTC TCAGCGCTCG CAGACCCGGT TGGAAGCGGT TAAAGTAGAG
CCGGCGGTCG AGGTCCCAAA TCCTTGTACC GGACGGGAAA TCCTTCCGGA GAGCTGGTTC
TTGAGCCAGG GGGAAGATTC CTTCCCTTAT CCGGAGGTGC TCCTTCCCTG CCTCTTTCCC
CGCGTGGTGT CTCTTCTGGC TTATCTTCCT CCTGGGGCGC CCTTAGCGCT GGTGGAGGCC
CAGGCGGCGG AAAAGGCGGC CCGTGAGGCC GAAGAGCGGC AGATGGAGAT CTGCCGGGAG
ATGATTGCCA AGAAAAAGCT GCCGGAGGAG AGCCGGAAAG CTTTTCTTTC TTGGTCTGAA
GTGGCCAAGG AGCTAAGCCT TTATCCCCAC CGCCTGCGCC TTTCTTTTCT GCCGGAGAAG
AACGGGGAAG TCCTGGGCCT GGCGGTGCGG ACTGCCCCCA GCTTCCTTGG CAAGTTTGCC
CAGCTGGCGG AAGAAATACA GGAGTTCATG CGTCACTACC GTGTGATCCT GCTAGTGGAC
AAGGAAGAAA GGGTCAAAGG AGTAGTGGAG GGGCTTAAAG AGTACGGTAT CATTCCCAGG
CTGACGCCGG ACTCCGCCCC GGTAGGCACG GTGACGGTGG TGAAAGGGGG GAACTTGCGA
GAGGGGTTTA TCTTCCCCGA GGCTCAATTC GTCCTCCTCA CTCCGGCAGA GATCTTCGGC
CGACGCCAAG CTACCTTCTC GCCCACTCCG ACCCCGGTGG TGGAGGAAGA GCGGGAGTTC
AAACCGGGGG AGTACGTAGT CCATCCGGAG CACGGGATAG GCATCTACCG GGGGCTGGTC
CAGCTCTCCG TAGAAGGGGT AACACGGGAG TACGCCCTCA TCCAGTACGC CGGTGAAGAC
AGGCTTTACC TTCCAGCCGA CCAACTGGGG GTGCTCGAGC GCTACGTAGG AGGGGAGGGG
GCCAAGCCTC GTCTTTCCCG TCTGGGAGGG GGAGAGTGGA AGCGGGTTCG CGCCCGGGTC
AAACAGGCGG CGACTGACGT GGCGCGGGAA CTCTTACGCC TTTACGCCAT GAGGGAGACG
GCTAAAGGTC ACGCCTTCTC GCCCGATACA CCTTGGCAAA GGGAGTTTGA GGCCGCCTTT
CCCTACGAGG AGACCCCGGA TCAACTCCGG GCCATTGCCG ACGTGAAGGC GGACATGGAA
AAGCCCCGCC CTATGGATCG GCTCATCTGC GGGGACGTGG GCTTCGGCAA AACGGAGATA
GCCTTGCGGG CGGCTTTCAA GGCGGTGATG GACGGCAAGC AGGTGGCGGT GTTGGTTCCC
ACCACCATCC TGGCTCAGCA ACACTACCGG ACCTTCTCCA GCCGCTTTGC TCCTTACCCG
ATAAGAGTAG CCTGGCTCTG CCGCTTCCAG ACCCCGGCGG AGCAGCGGGA GGTGATAAAG
GGGCTTAAGG CGGGCACTAT CGACATTGTC ATCGGCACCC ACCGGCTTTT GCAGAACGAC
GTGCAGTTTC GCGACCTGGG CCTGGTGATC ATCGACGAAG AACAACGCTT CGGCGTCCTG
CAAAAGGAGA AGCTCAAGCT TCTGCGGAAG GAAGTGGATG TACTCACCCT GACGGCCACC
CCCATTCCCC GCACCCTTTA CATGTCTCTG GTCGGCTTGC GGGACACCAG CTGTCTTACC
ACCCCTCCTC CCGACCGGCT GCCGGTGGAG ACCTACGTGG TGGAGGAGGA CCCGGCCATC
ATCCGCGAGG CCATCAGGCG CGAGTTGGCC CGGGGTGGGC AGGTGTACTT CGTTTACAAC
CGGGTGGCTG GCATCGTGGA GGTGGCCAAC TGGGTCAAGC ACCTGGTGCC GGAAGCCAGG
GTGGCCTATG CGCACGGCCA GATGCCGGAA GCCGCCCTGG AGCGCATCAT GCTCGACTTC
ATCGACCATA AGTACGATGT GCTGGTGGCT ACCACCATCG TGGAAAACGG GCTGGACATC
GGCAACGTTA ACACCCTGAT CGTTAAAGAC GCCGACCAAC TAGGGCTTTC GCAGCTATAC
CAGCTGCGGG GAAGGGTGGG TAGGACCAAC CGGCTGGCCT ACGCCTACTT CCTGTACCGC
CGGGACAAAA TAATAAACGA AGCAGCCAAG GCACGGCTCC GGGCCATAAA GGACTTCACC
TCCCTAGGGG CGGGGTTTAA AGTGGCCAAG CGCGACCTGG AGATCCGGGG TGCCGGGAAC
CTCTTGGGCA CGGAGCAGCA CGGGCACATC CAGGCGGTGG GGCTGGAACT CTACTGCCGG
CTGCTGCAGG AGGCCATAAA GGAGCTCAAG GGAGAAGAAG TGGTCCCGCC GGTGGACCCG
GTGATCGAAC TCACGGTATC GGCCTACATC CCGGACGACT ACGTTCCCTT CGACCAGAAG
CTGGAGATCT ACCAGGAGCT GAGCCGGGCC GAGACCCCGG AGGAGGTGGA GGGTCTGGCC
GAGGGTTACC GCGATCGCTA CGGTCCTTTC CCGCCTCCCT TCCGCAACCT TCTGGCGGTG
GCGCGGCTGC GGGCTCAGGC CAAAAGATTG CGGCTCAAGC TCATAGGACG CCAGGGCGGG
TTTTACCGCT TGGTCTTTGC GCCTGGACAC CAACTTTCCC CCGCCAAGCT GGTTGCGGTA
GCGGATAAGT GGGGGGCGCG CTTCAAGCAG GAGGGAGAAG ATTTCGTTAT CCTGCTCCCG
GCTTCCGGGA GAGGGCCGGA GGGGGAGCCT GAACTCAAAA AATTGTCGCA ATTTCTTGTG
GCCCTCCACT AA
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| Protein sequence | MEFLLKLFCE APSVQKIKTA LQAGKPQAVY GLSGTALSFL LAATFREWPA GMVIVPDEET
ALTLAAELKL LWGEEVFVFL PREIFGLGPS LPSAFVPRQR LLSLAALARR QGVVVATAPA
LLQGLAPPEN FSPHCWELWK GEELSPEELG QRLVETGYVR VSAVEVPGQF ARRGGIVDFF
PPSSPLPVRV EFDGDEIARI ATFDPASQRS QTRLEAVKVE PAVEVPNPCT GREILPESWF
LSQGEDSFPY PEVLLPCLFP RVVSLLAYLP PGAPLALVEA QAAEKAAREA EERQMEICRE
MIAKKKLPEE SRKAFLSWSE VAKELSLYPH RLRLSFLPEK NGEVLGLAVR TAPSFLGKFA
QLAEEIQEFM RHYRVILLVD KEERVKGVVE GLKEYGIIPR LTPDSAPVGT VTVVKGGNLR
EGFIFPEAQF VLLTPAEIFG RRQATFSPTP TPVVEEEREF KPGEYVVHPE HGIGIYRGLV
QLSVEGVTRE YALIQYAGED RLYLPADQLG VLERYVGGEG AKPRLSRLGG GEWKRVRARV
KQAATDVARE LLRLYAMRET AKGHAFSPDT PWQREFEAAF PYEETPDQLR AIADVKADME
KPRPMDRLIC GDVGFGKTEI ALRAAFKAVM DGKQVAVLVP TTILAQQHYR TFSSRFAPYP
IRVAWLCRFQ TPAEQREVIK GLKAGTIDIV IGTHRLLQND VQFRDLGLVI IDEEQRFGVL
QKEKLKLLRK EVDVLTLTAT PIPRTLYMSL VGLRDTSCLT TPPPDRLPVE TYVVEEDPAI
IREAIRRELA RGGQVYFVYN RVAGIVEVAN WVKHLVPEAR VAYAHGQMPE AALERIMLDF
IDHKYDVLVA TTIVENGLDI GNVNTLIVKD ADQLGLSQLY QLRGRVGRTN RLAYAYFLYR
RDKIINEAAK ARLRAIKDFT SLGAGFKVAK RDLEIRGAGN LLGTEQHGHI QAVGLELYCR
LLQEAIKELK GEEVVPPVDP VIELTVSAYI PDDYVPFDQK LEIYQELSRA ETPEEVEGLA
EGYRDRYGPF PPPFRNLLAV ARLRAQAKRL RLKLIGRQGG FYRLVFAPGH QLSPAKLVAV
ADKWGARFKQ EGEDFVILLP ASGRGPEGEP ELKKLSQFLV ALH
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