| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_1021 |
|---|
| Symbol | |
|---|
| ID | 8491007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ammonifex degensii KC4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013385 |
|---|
| Strand | - |
|---|
| Start bp | 1036106 |
|---|
| End bp | 1036699 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 646359043 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_003239004 |
|---|
| Protein GI | 260892907 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAGG CAAGGTTCGG GCTGCTTCTC TTTCTGGTGG CCTTGTGCGG TCTTTTACTG
CTCAACTGGC GTGAAATAGG GCAACACTAC TATCCCCTCA AGTACCGCGA GACGATTTTC
CGCCACGCCC AGGCCCACGG GATCGATCCC CTCTTGGTGG CCGCCATCAT CAAGACGGAA
AGCAACTTCT GCCCAGAAGC TGTTTCTCAT CGGGGAGCAA TAGGACTCAT GCAGCTCCTG
CCCTCCACCG CTCAGGAAGT GGCCGAGCTA AAAGGCAAAC CCTTCGATCT CCAGAGCCTT
TACGACCCGG AAACCAACAT TGCCCTGGGA ACTGAGTACC TAGCCTTGCT TTTCAAAGAA
TTTCGCGACC CGGTTCTGGT GCTGGCCGCC TACAACGGGG GAAGGGGCAA TGTGGAAAAG
TGGTTAAAAA GCGCTACCTG GTCGGGAAAG GAGCTGGACC TCGACCAGAT CCCCTTTCCC
GAAACCAGGC AGTTCGTCCG CAAGACCCTG TGGAACTACC GGGTTTACCG GCTCCTCTAC
CGGGAGGAAA GCTCCCGCAC CACCGCCGCG CAACGCGGGC AAAGTTCAGG GTAA
|
|---|
| Protein sequence | MGKARFGLLL FLVALCGLLL LNWREIGQHY YPLKYRETIF RHAQAHGIDP LLVAAIIKTE
SNFCPEAVSH RGAIGLMQLL PSTAQEVAEL KGKPFDLQSL YDPETNIALG TEYLALLFKE
FRDPVLVLAA YNGGRGNVEK WLKSATWSGK ELDLDQIPFP ETRQFVRKTL WNYRVYRLLY
REESSRTTAA QRGQSSG
|
|---|
| |