| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_1009 |
|---|
| Symbol | |
|---|
| ID | 8490995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ammonifex degensii KC4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013385 |
|---|
| Strand | - |
|---|
| Start bp | 1025036 |
|---|
| End bp | 1026388 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 646359031 |
|---|
| Product | Histone deacetylase |
|---|
| Protein accession | YP_003238992 |
|---|
| Protein GI | 260892895 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.287637 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCAC GTTTGGGACT GGTCTTCTTT CCCGCTTTCG ACTGGGCCAT CTCCCCTACC
CACCCGGAGA GGGAAGAAAG GCTCCTTTAC ACCAAGGACC AGCTCTTCGA AGAGGGAGTA
CTGGACCTTC CCGGGGTGGT GGAGTATCGC GCTCGCCCGG CTTCTTTTAA GGACGTGGCC
CGCGTACACT TCTGTGTGCC CCAAGTAAAG AGCCTGGCAG GAGAAGCACA CCTGGTGGCG
GCGGGTAGCG CGATTCACTT GGCAGAAGCC TGGCGGCGAG GAGAAATAAA GCGGGGTTTT
GCCCTGGTTC GCCCGCCGGG ACACCATGCC CGGAGGGTAG TGCACGGCAA CCGAGGCTTC
TGCAACATCA ACAACGAGGC CATTATGATA GAGTATCTGC GCCGCCACTA CGGAGTTAGG
AGAATAGCCA TCGTGGACAC CGACGTGCAC CACGGCGACG GCACCCAGGA CATTTATTAT
CACGACCCGG AAGTACTCTT TATCTCCCTA CACCAGGACG GGCGAACCCT CTACCCGGGA
ACAGGCAGCG TGAACGAACT GGGCGGGCCG GGGGCCTTCG GCTACACCTT AAACGTTCCC
CTGCCGCCCC GCACCAACGA TGAGGGTATC CTCTATGTCA TGGAAGAGCT GGTATTACCC
GTGCTGGCTG ACTTCCAGCC CGAGCTTATA GTGAACTCCG CCGGACAGGA CAACCACTAC
TCCGATCCTC TAGCCGACAT GTGCTTCACT GCCCAGGGGT ACGCGCAGCT CAACGCCCTT
TTAAAGCCCG ACCTTTGCGT GCTCGAAGGG GGCTACTCCA TCGAAGGAGC CCTGCCCTAC
GTCAACCTGG CCATAATACT TGCCCTAGCA GGGTACGACT ACAGCCGGGT AAGGGAGCCC
GACTACGATC CTTCGGCCTT TCCCCTCACT CCGGCTCACC GCGAGTATAT CCGCTCCTTG
GTACGGGAAC TGAAGCGTAT CTGGCAAAAC CGGGAAGAGT TGGCCTGGCA GAACCGGCCT
ACGGGAGATT TTGCCGAGTT TCGTCGCCGA GTCTTCTACG ACACGGACGG GATCGAAGAG
TTCCAGGAAG AAAAAGTACG CCTCTGCCCT CGCTGCCCCG GCTATCAGGA GATAAGCTCC
TACGGGCTTT ACCCCGACGG CCGCCGCCTG GAGGTGCTGG CCTTAAGCCT CCCCTTGCAG
GCCTGCGAGG AATGCCAGCG GGAGGCCAGG GAGGCCTACT CTCACCACAA GGAAAAGCGC
ACCTCTAAAT ACGCAGTAAT CTACCTCCAG GACAGGCCCG CCGACCGCTA CTACCACTAC
TACCCGGCTA CTGACCGAGA GGAAGTACTT TAA
|
|---|
| Protein sequence | MAARLGLVFF PAFDWAISPT HPEREERLLY TKDQLFEEGV LDLPGVVEYR ARPASFKDVA
RVHFCVPQVK SLAGEAHLVA AGSAIHLAEA WRRGEIKRGF ALVRPPGHHA RRVVHGNRGF
CNINNEAIMI EYLRRHYGVR RIAIVDTDVH HGDGTQDIYY HDPEVLFISL HQDGRTLYPG
TGSVNELGGP GAFGYTLNVP LPPRTNDEGI LYVMEELVLP VLADFQPELI VNSAGQDNHY
SDPLADMCFT AQGYAQLNAL LKPDLCVLEG GYSIEGALPY VNLAIILALA GYDYSRVREP
DYDPSAFPLT PAHREYIRSL VRELKRIWQN REELAWQNRP TGDFAEFRRR VFYDTDGIEE
FQEEKVRLCP RCPGYQEISS YGLYPDGRRL EVLALSLPLQ ACEECQREAR EAYSHHKEKR
TSKYAVIYLQ DRPADRYYHY YPATDREEVL
|
|---|
| |