| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_0868 |
|---|
| Symbol | |
|---|
| ID | 8490853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ammonifex degensii KC4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013385 |
|---|
| Strand | - |
|---|
| Start bp | 882018 |
|---|
| End bp | 882770 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 646358895 |
|---|
| Product | polysaccharide deacetylase family sporulation protein PdaB |
|---|
| Protein accession | YP_003238857 |
|---|
| Protein GI | 260892760 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | [TIGR02764] polysaccharide deacetylase family sporulation protein PdaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0275636 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGTGT TTTACCTGAA TCTCCGGCGT CTCAAAGAGG GTCTGCTCTT GCTCGGAGGA
GTAGCGTTTA TAGGGGGACT AGTAGTTCTT GGCCTCCTGA GAGAACCCGC CGCTTCCCCG
ACCAGTACCT CCTCTTCCCC CATCGTCTAC CGGGTACGCA CCGAGGAGAA GCTGGTGGCC
CTCACCTTCG ACATAAGCTG GGGGACGGAA ACTCCTCCCA AGGTGCTCGA TCTCCTAAAA
AAAGAAAACG TTAAGTGCAC CTTTTTCCTC TCTGGACCCT GGGTAAAGAA GTATCCGGAG
CTGGCCCGAC GGATAGCCGA GGATGGACAC GAAATTGCCA GCCATGGACA CCGCCACATA
AACTTGAGTC CCCTTCCACC GGGAGAGATA AGGACAGAGA TCAGCCGGGC CCACGAGACC
ATAAAAGAGG TAACGGAGAA GACCCCTAAG CTCATCCGCA CGCCCAACGG CGATTACAAC
GCCAAGGTGC TAAAGGTGGC TAAGGATATG GACTACACGG TAATCCAGTG GGATGTGGAC
TCCCTTGACT GGAAAAATCC GGGAGTAAAT ACCATCATCG CGCGCGTCCT CAAAAACGTG
CGCCCGGGGA GCATAGTGCT GCTTCACGCT AGCGACACCT GCCAGCAGAC CCACCTGGCC
CTTCCCGCTA TCATCCAGGG GCTTAAAGAA AAAGGTTACC GCATGGTAAC CGTATCGGAG
CTTTTGCGGT ACGGTCCGGG AGTGGCCGAA TGA
|
|---|
| Protein sequence | MRVFYLNLRR LKEGLLLLGG VAFIGGLVVL GLLREPAASP TSTSSSPIVY RVRTEEKLVA
LTFDISWGTE TPPKVLDLLK KENVKCTFFL SGPWVKKYPE LARRIAEDGH EIASHGHRHI
NLSPLPPGEI RTEISRAHET IKEVTEKTPK LIRTPNGDYN AKVLKVAKDM DYTVIQWDVD
SLDWKNPGVN TIIARVLKNV RPGSIVLLHA SDTCQQTHLA LPAIIQGLKE KGYRMVTVSE
LLRYGPGVAE
|
|---|
| |