| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_0431 |
|---|
| Symbol | |
|---|
| ID | 8490402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ammonifex degensii KC4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013385 |
|---|
| Strand | + |
|---|
| Start bp | 440564 |
|---|
| End bp | 442516 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 646358458 |
|---|
| Product | glycoside hydrolase 15-related protein |
|---|
| Protein accession | YP_003238434 |
|---|
| Protein GI | 260892337 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
|---|
| TIGRFAM ID | [TIGR01577] oligosaccharide amylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0395513 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAGAG AGATAATTTT AGGAAACGGG CGTTTATTGG TTAACCTCGA TTCCCGGTAC
CGAGTGCGGG AGCTCTACTA CCCCTATGTG GGTAAGGAGA ACCACCTGCT GGACGGTATA
GGTGAGGTGG GGGTATGGGT CGAAGGTAAT TTTTCCTGGG TAGGGGAGGC AGGCTGGGAG
ATAGGGAGCC GCTACGAGGA AGAGACGCTG GTGGCGGTGA CTGTAGCCTT CAACCCTGCT
TTGCAGCTCT CTTTGCGCTT TATTGAAGCG GTGGACTGGG AGAGAGAAGT ATGGGTACGA
AAGGTAGAGG TTAAAAATCT GGCTTCTTAC TCCAGGGAAA TCCGGGTTTT CTTTTACCAC
GACTTTAACC TCGGAGGCTA TGACCTGGGC GATACGGCCT TTTACGACCC TGCCACGCGA
GGGATGGTAC ACTATAAATC TTGCTATTTT TTGCTGTTAA ACGGTCATGA GGGAATAGAT
CGCTACAGCA TCCGGAAGCG GGGCGGCGGG GGGAGCCGGG CCGATGCAGA AGACGGAGAG
TTGGCCGGTC CCCCAGCCGA TCAGGGGGAT ATGAACAGCG CGGTGGCTTT TTCTTTTTAC
TTGGAGGCCG GGGGGGAAAA GACCTTCTTT TTCTGGCTGG TGGCGGGCAG AAGCTTGGAG
GAGGTGCGGG AGAAGGACGG GTGGGTGAAG CACAAGGGGC CGGATGAGAT ACTGGAGCGT
ACCCGGCTCT TCTGGCGGCA CTGGCTTAAG CGCACTCGGC GCAAAGACTT CGCCGACCTG
CCGGAAGATC TAATTAGGCT TTACCGGCAC AGCCTCTTGG TTTTGCGGGC ACAGACGGAC
CTGCGGGGAG GGGTGCTGGC CGCCTCGGAT ACGGATATCC TGGCCACCAA CCGCGACCAT
TACGCCTATA TCTGGCCGCG CGACGGAGCC CTGGTAGCCC ACGCTTTGGA CCGAGCAGGT
TACCCGGAGG TAAGCCGTGC CTTTTTCAAC TTCGCCGCCT CGGTTTTGCG GCAAGGGGAA
GGATTCTTCT GGCATAAGTA CCACCCCGAC GGGACCCTGG GTTCTTCCTG GCTGGCCTGG
CTGCACGGCG GGGAGGAGAA GCTCCCCATC CAGGAGGACG AGACCGCCCT GGTCCTTTGG
GCCTTGGGGG AGCACCTGCG CCTTTATCCG GAAGCCTCTG GGTATTTAAC GGACTGGTTT
TCTTCGCTGG TAAAGCCTAT GGCCTCTTTT CTGGCATGTT ACCGCGACGA GAAAACCGGC
CTTCCTCTAC CTAGTTACGA CCTTTGGGAG GAGCGCTACG GCACTTTTAC CTTTACCGCC
AGTACCGTTT ACGCCGCCTT GCGGGCAGCG GCTTACTTAG CTATTCTGGC GGGGGAGAGG
TTATTGGCCC GGACCTGGAA ACAGGCGGCG GAAGAGGTCA AGCAGGGGGT GTTGGAGCAC
CTTTACGACC GGGAGCGAAA CCGCTTCCTA CGGGGGCTCG GCCTCACCGC TAGGGGCTTG
TCCCCCGACC CTACGCTGGA CGCCAGCCTC TGGGGGGTGT GGCGCTTCGG CCTGCTTCCA
CCTTCCGACC CGCGGGTGGT AGCCACCATG GAGGCGGTAG AGGAAGGGCT TAAAGTCAAG
ACGGCGGTAG GGGGGATAGC CCGCTACCAC GGAGACTATT ACTTCCGCCA AACAGAGAAC
TTCGACACTG TGCCTGGAAA TCCGTGGATA ATCACCACCC TCTGGCTGGC CGAATACCTG
ACGGTGCGGG CGAACCGTAA AGAGGAGCTG GCCCCGGCTA AAGAGCTTTT GTGCTGGGCG
GCCCGGCACA AGAGTTCCAC CGGCATGCTG CCCGAGCAGC TGCACCCTTT CACCGGCACC
CCCCTTTCCG TTTGTCCTCT TACCTGGTCG CACGCCGCCT TTATCGAGGC AGTGGAGGCT
TACCGGCGAG GCTGGCGGGC CTTCCCTTCC TGA
|
|---|
| Protein sequence | MPREIILGNG RLLVNLDSRY RVRELYYPYV GKENHLLDGI GEVGVWVEGN FSWVGEAGWE
IGSRYEEETL VAVTVAFNPA LQLSLRFIEA VDWEREVWVR KVEVKNLASY SREIRVFFYH
DFNLGGYDLG DTAFYDPATR GMVHYKSCYF LLLNGHEGID RYSIRKRGGG GSRADAEDGE
LAGPPADQGD MNSAVAFSFY LEAGGEKTFF FWLVAGRSLE EVREKDGWVK HKGPDEILER
TRLFWRHWLK RTRRKDFADL PEDLIRLYRH SLLVLRAQTD LRGGVLAASD TDILATNRDH
YAYIWPRDGA LVAHALDRAG YPEVSRAFFN FAASVLRQGE GFFWHKYHPD GTLGSSWLAW
LHGGEEKLPI QEDETALVLW ALGEHLRLYP EASGYLTDWF SSLVKPMASF LACYRDEKTG
LPLPSYDLWE ERYGTFTFTA STVYAALRAA AYLAILAGER LLARTWKQAA EEVKQGVLEH
LYDRERNRFL RGLGLTARGL SPDPTLDASL WGVWRFGLLP PSDPRVVATM EAVEEGLKVK
TAVGGIARYH GDYYFRQTEN FDTVPGNPWI ITTLWLAEYL TVRANRKEEL APAKELLCWA
ARHKSSTGML PEQLHPFTGT PLSVCPLTWS HAAFIEAVEA YRRGWRAFPS
|
|---|
| |