| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_0226 |
|---|
| Symbol | |
|---|
| ID | 8490191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ammonifex degensii KC4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013385 |
|---|
| Strand | + |
|---|
| Start bp | 224361 |
|---|
| End bp | 225938 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 646358264 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_003238246 |
|---|
| Protein GI | 260892149 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.885298 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAGAG ACGAGGGGGT TTGGAGCTTA GTGGAGAGAG TTTACATCTT CGACACCACC
TTGCGCGACG GTGAGCAGTC GCCGGGAGTA AGCCTCAACG TCAAGGAGAA GGTGGAGGCG
GCGCGGCAGC TGGCCCGCCT GGGGGTGGAC GTGATCGAGG CGGGCTTCCC GGTGGCCTCA
CCGGGAGACT TTAACGCCTG CCGGGAGATC GCCCGGGCGG TGCGGGGGGT AACCGTCTGT
GCCCTGGCCC GTGCCCGCTT TGCCGACATA GACCGGGCCT GGGAGGCGAT AAAGGAGGCG
GAGTCGCCGC GCATCCATAC CTTCATCGCC ACTTCCGACA TCCACCTCCA GTACAAGCTG
CGGATGACGC GAGAGCAGGT ACTGGAAGCG GCGCGGGAGG CGGTGGCCTA CGCCAAGAGA
TACACCTCCG ACGTGGAGTT TTCCGCCGAG GACGCCTCCC GCTCCGATCC CGACTTCCTC
TGCCGGGTGC TGGCCGAGGC CATAGCGGCG GGAGCCACCG TGGTCAACAT CCCCGACACG
GTGGGCTACG CCGTCCCCGA GGAATTCGGG GAACTCATCC GCACCATCAA AGAGAAGACA
CCGGGAATAG AAAAGGTAGT GATAAGCTGC CACTGCCACA ACGATCTGGG GCTGGCAGTG
GCCAATACCC TGGCGGCCAT CCGCAACGGG GTGCGACAGG TGGAGGTGAC CGTCAACGGC
ATCGGGGAGC GGGCGGGTAA TGCCGCCCTG GAGGAAGTAG TCATGGCCCT CTACGCCCGC
CGCGCCTTCT ACCAGGTGAC CACCGGCATC CGGACCGAGG AAATATACCG GACCTCCAAG
CTCATCTCCT CCCTCACCGG CATGCCGGTG CAGCCCAACA AGGCCATCGT GGGCAAGAAC
GCCTTCGCGC ACGAGTCGGG CATCCACCAG GACGGGGTGC TCAAGGAGCG CACCACCTAC
GAGATCATCG ACCCGGCGGT GATAGGGGTA CCGCGCTCTC GTCTGGTCCT GGGCAAGCAC
TCGGGACGCC ACGCTTTCCG GGTACGCCTG CGGGAGCTGG GCTACGAACT TTCGGAGGAG
GAGCTCAACG CCGCCTTCCA GCGTTTTAAG GAGCTCTGCG ACCGCAAAAA GGAAATAACC
GACGACGACC TGCTGGCGCT GGTGGAGGAA GAAATAGGGC AGGTGCCTCC TACCTACGAG
CTCCGCTACT TCCACATTTC CAGCGGTACT ACTGTGGTGC CCACCGCCAC CGTGGCCTTG
AAGATAGGGG AGGAAGTGAA AGAGGAGGCC GCCTGCGGCA ACGGCCCGGT GGACGCCATC
TACAAAGCCA TCGACAAGCT GACGGGCCGC CACCTGCGCC TGGACTCCTA CAGCATAGAG
GCGGTGACCG AAGGTAAAGA CGCCATCGGC AGCGTCACCG TCCGGGTGAC CGACGAGGAA
AGGGGCAAGA CCTACCTGGG AAGGGGCATC AGCACCGACG TCCTGGAGGC CAGCGCCCGA
GCCTACATCG ATGCCCTCAA CAAGCTGGCG GCAGACTTCA ACGGCAACCG GTCCAGGCAA
CCGGAAGGGG AGGTTTAA
|
|---|
| Protein sequence | MRRDEGVWSL VERVYIFDTT LRDGEQSPGV SLNVKEKVEA ARQLARLGVD VIEAGFPVAS
PGDFNACREI ARAVRGVTVC ALARARFADI DRAWEAIKEA ESPRIHTFIA TSDIHLQYKL
RMTREQVLEA AREAVAYAKR YTSDVEFSAE DASRSDPDFL CRVLAEAIAA GATVVNIPDT
VGYAVPEEFG ELIRTIKEKT PGIEKVVISC HCHNDLGLAV ANTLAAIRNG VRQVEVTVNG
IGERAGNAAL EEVVMALYAR RAFYQVTTGI RTEEIYRTSK LISSLTGMPV QPNKAIVGKN
AFAHESGIHQ DGVLKERTTY EIIDPAVIGV PRSRLVLGKH SGRHAFRVRL RELGYELSEE
ELNAAFQRFK ELCDRKKEIT DDDLLALVEE EIGQVPPTYE LRYFHISSGT TVVPTATVAL
KIGEEVKEEA ACGNGPVDAI YKAIDKLTGR HLRLDSYSIE AVTEGKDAIG SVTVRVTDEE
RGKTYLGRGI STDVLEASAR AYIDALNKLA ADFNGNRSRQ PEGEV
|
|---|
| |