Gene Namu_5403 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNamu_5403 
Symbol 
ID8451036 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNakamurella multipartita DSM 44233 
KingdomBacteria 
Replicon accessionNC_013235 
Strand
Start bp6047817 
End bp6048968 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content71% 
IMG OID645044433 
Productcell wall hydrolase/autolysin 
Protein accessionYP_003204655 
Protein GI258655499 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones85 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCTGC GGCGCGGTGA TCGAGGGCCG GCAGTGGCCG ACCTACGGGA TGCACTGGCA 
AGTCTGCAGC TGCTGCCCTC CCTGAACGGC GTGGATCGCG GATCGGTCGA GTTCGACACG
ACGGTGGACC GCGCGATCCG CGACTTCCAG CAGCGGCGTG GACTGATCGC CGACGGGATC
GTCGGTCCGG TGACCGCGCG TTCGCTGACC GACGCCCGCT GGACGCTGGG CGACCGGGCG
CTGTCCTACA CCCTGTCGGC GCCGATGACC GGCGACGACG TGATGGCGCT GCAGACCCGG
CTGTCCGAGA TGGGTTACAA CACCGGCCGG CCGGACGGCA TCTTCGGGCC GCTGACCGAT
CTGTCGGTCC GCGACTTCCA GCGCCATCGC GGCCTGGCCG ACGACGGGGT ATTCGGTCCC
CAGACCTACA AGGAGCTCAA CCGCATCGGC CGCATGGTCA CCGGGGGTCG CCCGCAGTAC
CTGCGCGAGT ACCAGCTGGT CCGCCAGGCC GGCCCCCGGC TGCACGGCAA GCGGATCGTC
ATCGATCCGG CGCACGGCGC CGACGACCCG GGCTGGTGCA GCGGCGAGGC CCGCAGCGCC
GACCTGACCT TCGACATCGC GCAGCGACTG CGCTCGCGGA TGGTCACCGC CGGCATGGCC
GTCACCCTGA CCCGCGGGGC CCATCAGAAC CCCAGCCAGG AGGAGCGGGC CGCCTTCGCC
AACGACATCG GCGCGGACCT GCTGCTGAGC CTGCACATCG ACGGCTCGCC CTCGCCGCAT
GCGTGCGGGA TCGCGACCTT CCACTTCGGC ACCGACTCCG GCGCCACCTC CACCGTGGGC
GAGACGCTGG CCGGTCTGGT CCAGCGCGAG CTGGTCGCCC GGACCCGGTT CGCCGACTGT
CGCGTCCACC ACCGGCCCTG GGACATCCTG CGGCTGACCC GGATGCCGGC GATCCAGGTG
GAGATGGGCT ATCTGTCCAA CCCGGTGGAG CGGGACCGGC TGCTGTCCTC CGATTTCCGC
AACCAGCTGG CCGACGGCAT CCTGGTCGCG GTCAAGCGGC TGTACCTGGA CGGCCGGGAC
GACCCGCAGA CCGGGACCTT CACCTTCTCC GATCTGCTGG CCCACGAGCG GCGCATCCGC
GACTCGGCCT GA
 
Protein sequence
MLLRRGDRGP AVADLRDALA SLQLLPSLNG VDRGSVEFDT TVDRAIRDFQ QRRGLIADGI 
VGPVTARSLT DARWTLGDRA LSYTLSAPMT GDDVMALQTR LSEMGYNTGR PDGIFGPLTD
LSVRDFQRHR GLADDGVFGP QTYKELNRIG RMVTGGRPQY LREYQLVRQA GPRLHGKRIV
IDPAHGADDP GWCSGEARSA DLTFDIAQRL RSRMVTAGMA VTLTRGAHQN PSQEERAAFA
NDIGADLLLS LHIDGSPSPH ACGIATFHFG TDSGATSTVG ETLAGLVQRE LVARTRFADC
RVHHRPWDIL RLTRMPAIQV EMGYLSNPVE RDRLLSSDFR NQLADGILVA VKRLYLDGRD
DPQTGTFTFS DLLAHERRIR DSA