| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_5244 |
|---|
| Symbol | |
|---|
| ID | 8450875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 5849659 |
|---|
| End bp | 5851539 |
|---|
| Gene Length | 1881 bp |
|---|
| Protein Length | 626 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 645044275 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
|---|
| Protein accession | YP_003204499 |
|---|
| Protein GI | 258655343 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGA CCTTGGACGA CCTGGTGACG TCGGTGGCCA CGGAGCTGAT GGGGGTGACC
ATCTCCAACC TGGAGGCCGC CTCCCGCGAC CTGCTGCACC GGTTGGTCGA CTACTTCGAG
GTCGACCTGA GCTTCCTGCG GCGCAACGAC CACGAGCTGG GCGCCACTGT CCTGGTCGCC
GAATGGCCGC CCCGGGAGGA CATCCCGGAT CCCGATCCGC TCGGGGTCAT CTATTTCGCG
GGCGCCGATC CGACTTTCGC CGCGCTGGAG AACCTGAAGT CGGTGATGAC CCAGCGGCCC
AGCAACGACG AGAAGTACCA GGACCGGGTG CGGCAGGGCT CGGGCATCCA GGAGGTGTCG
CTGGCCACCG TGCCGTTGAT GACCAACGAC ACGACCACCG GGACACTCGG TTTCATCAAG
TACGGCGACC GGGAGTGGCT GCACGACGAG ATCAATGCCC TGCAAGCGGT GGCCGCGCTG
CTGGCCCAGC TGCAGGCGCG GGTGGCCGCC GAGGAACGGC TGCACTACCT GGCCTATCAC
GACGAGCTGA CCACCTTGGC CACCCGCCGC GGGCTGACCG ATCACCTGGC CAAGCGCCTC
AAGCCGGGTG CCCCCGGACC GGTCGCGGTC ATCTTCATCG ACGTGGACCG GCTCAAGGCC
CTCAACAGCT TCCTCGGCCA TGCGGCGGGC GATCAGTACC TGCACACCCT GGCCCACCGG
CTGCGGGAGG CGATGCCCAA CGACCAGCTG CTGGCCCGGC TCGGCGGTGA CGAGTTCGTC
TCGGTCATCC TCGGCCCGGC CGATGAGGAG CGTGCCCGGG AGTGCGCGGA ACGTCTGCGG
ATCGCCGCGA ACCAGCCGGT GCAGGTCGGT GGCGAGGAGA TCACGCGGGG AGTCAGCGTC
GGCGTCGCCC TGGGCGTGCC CGGCGCCGCC GATGTCTCGG AGCTGATGAA TCAGGCCGAC
CAGGCCATGC TGCAGGCCAA AGGCAATGGC GGCAATGCGG TCTGCTTCTT CACCGCAGAG
ATGCGGCGGC AGAACGAGAT CCGCACCGAC ATCGAGCTGC ACCTGGTCAC CGCGGTGCGC
AACGACTCCC TGGTCCTGTT CTTCCAGCCC CAGGTCGCGC TCGAATCGGG CACCATCGAC
GGGGTCGAGG CCCTGGTCCG CTGGCCGCAT CCCAATCTGG GGCTGCTGCC CCCGAGTGCG
TTCATCGACG TCATCGAGAC CACCAACCTG GCCGGTGAAC TCGGTCGCTG GGTGATCGAA
TCCGGCTGCC GGCAACTCAA GGCCTGGCAC GATCGTTTCC CCAAGGACGA ACCGCTGACG
ATGAGCGTGA ACGTCTCCCC CGCCGAGCTG CTCACCACCG ACTTCGTCGC CACCGTCCGC
CGGACGTTGG TCGAGACCGG GCTCGACGGG CAGTACCTCA CCCTGGAGAT CACCGAGAAG
GCACTGGTCC GGGACACCGA GCAGGCCCTG CTCACCCTGC GCGGGCTCAA GGAGATCGGC
GTCAAGGTCG CCATCGACGA CTTCGGCACC GGGTACAGCT CGTTCGCCCA GTTGCGGGCC
CTGCCGGTGG ACGAGTTGAA GATCGACCGC ACCTTCGTCT CCGAATTGGG TCACAACTCC
AACGATCTGG CCATCGTGCG GTCGATCATC GGGTTGGCCG ACGCCTTCGA CCTGGAGATC
GTGGCCGAGG GTGTGGAGAC CGAGGTAGCC GCGGCCACGC TGATCGCGCT GGGCTGCCGC
CGGGCCCAGG GCTTCCTGTT CGGAGCTCCG CGGTCGGCCG CCGACCTGAC GACGATCCTG
GATCAGCGCA GCGCTTCCCG CTCCGCCCGG GCGGGCCGGC CCAGCCGGCC CGCACTGATC
CGGATCCCCA CCATTCGCTG A
|
|---|
| Protein sequence | MKMTLDDLVT SVATELMGVT ISNLEAASRD LLHRLVDYFE VDLSFLRRND HELGATVLVA
EWPPREDIPD PDPLGVIYFA GADPTFAALE NLKSVMTQRP SNDEKYQDRV RQGSGIQEVS
LATVPLMTND TTTGTLGFIK YGDREWLHDE INALQAVAAL LAQLQARVAA EERLHYLAYH
DELTTLATRR GLTDHLAKRL KPGAPGPVAV IFIDVDRLKA LNSFLGHAAG DQYLHTLAHR
LREAMPNDQL LARLGGDEFV SVILGPADEE RARECAERLR IAANQPVQVG GEEITRGVSV
GVALGVPGAA DVSELMNQAD QAMLQAKGNG GNAVCFFTAE MRRQNEIRTD IELHLVTAVR
NDSLVLFFQP QVALESGTID GVEALVRWPH PNLGLLPPSA FIDVIETTNL AGELGRWVIE
SGCRQLKAWH DRFPKDEPLT MSVNVSPAEL LTTDFVATVR RTLVETGLDG QYLTLEITEK
ALVRDTEQAL LTLRGLKEIG VKVAIDDFGT GYSSFAQLRA LPVDELKIDR TFVSELGHNS
NDLAIVRSII GLADAFDLEI VAEGVETEVA AATLIALGCR RAQGFLFGAP RSAADLTTIL
DQRSASRSAR AGRPSRPALI RIPTIR
|
|---|
| |