| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_5214 |
|---|
| Symbol | |
|---|
| ID | 8450845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 5812669 |
|---|
| End bp | 5815788 |
|---|
| Gene Length | 3120 bp |
|---|
| Protein Length | 1039 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 645044245 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_003204469 |
|---|
| Protein GI | 258655313 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGACAG AAGGGCAGCT TCACACGGTC GGGGGGTACG GGATGAGGCC AGTCTTTCGG
CCGGACCAGC GACGGTGTTC GGCGCCGTCC TCCGGTCCGG TCCGGGTGCT GGTCGCCCTG
GGGCTGATCG GGTGGGTGTT GGTGAGCGCG GTGTCCGACC CGCGCCTGGG CCGGGTCGCG
GTCGGACTGG CGGCGACGGT GGCCATCGTC GGCGGGGTCA TCGCCGGGCT GCGCGGCGGG
CCGGCCCGGG GTTGGTGGTG GGCCTCCGGG GCGATCGCGC TCTGGACCGT CGGGGACATG
ATCTGGTGGG CCGATTCGGC GGCCGACCAG GCACCGGGCA TTGTCGCCAC CGTCGGCCTC
TTCGGGTACG CCGGCCCGGT CCTGGTCGCG GCCTGGGTGC TCGACGGCGC GGCCGAGCGG
CCGATGACCT TCATCCGGCA GGTGCTGGAC GGCCTCATCG TCGGCGGCTC GGTCCTGTTC
GCCGCGTGGG TGCTGCTGAT GCATCTCGCG GGCGGCCGAA CCGGCTCCGA GCAGGGGCGA
TGGGCGGCCC TACTGACCCA GACGGCACTG GCCGCGGCCC TGGCCACCAC CCTGGTGATG
ATCGGGTTGA CCTACGCCGA GGGGGCCCGG AGGCCCTGGC TGCTGGCGGC CGGCGGCCTG
GGCCTGCTCG CGCTGACCAG CGCGGTGGCG TTGACCAACC CGGCGACCTG GCCGCTGGCC
GCCGGGTCGG TGGCCGCGCT GCTGCTGCTC GCCGCGGCCA CCTGGCGTGA TCCCGGGCCG
CAGGGGCGAC GACCCCGGGC CGTCCTGACC CCGGCCCAGG AGCTCATTCC CAACGCGGCC
GTCGTGGTGA TCCTGGTGGC CGCCGTCGTC GGCGACATCG TCCGCCGCCC GCCACTGATC
GTCGCCACCC TGGTCCTGTT GTCCATGGTG GCCGGCCGGC GGCTGCTGAT CAGCCAGGAA
AAGCACGCAC ACGCGACGAC CCTGGATCGA GACCTGACCC GGAGCATGGC CGAACTCGAC
GACGTCCAGT CGCTGCTGCA GCGAGCCTTC GAGGACTCGT TGACCGGCGG ATTGTGGACC
TCTATCGACG GTCGAATCCA CCGGGCGAAC CCTGCCTACT GCCGAATGCT CGGCCGCCCG
GAGTCGGACC TGGTCGGCAC TCGCTTGCCC ACGTGGGTCG ACCCGGCGAG TGCCGCACGG
GCTGAGGAGA TGTTCACCCG AGTGGGCACC ATCGACGGCG CCGGTCTGCC GGTCGAGCTT
CGATACCGCA AGCCCGACGG CAAGCCGCTG TGGGCCCAAC ACACGGCGGC GGTGTTCCGC
ACCGTCGAAG GCGCCCCGAT CCAGATGGGG GTGCAGGTCA TCGACGTGAC CGAGGCCCGG
ATGGCGGCCC GCCGGCAGGC CCATCAGGCC CGCTTCCTGG ACGCGATCCT GGAAAACATC
GGTTCCGCGG TCGTGGCCTG CGACGCCCAG GGGCAGGTGA ACCTGATCAA CTTGTGCACC
CGGGAGATGT TCAATCTGCC GCCCGCTCCC TGGATGCCGC CGCCCGGCAT CGAGCAGCCG
CCGGTGTACC ACGCCGATGG GATCACCCCG ATTCCACCCG ACGAGCGGCC GCTGAGCCGG
TCGCTGCGCG GCGAGCTGGT CCGCGACGTG GAGACCGTGT TCGGCGAACC GGGCGCGGAT
CGCCGCATCG TGCTGTCCAG CGCCCACCGC CTCCAGGACG AGGACGGCGC CGTGCTGGGC
GCCGTGCTGG TGATGCACGA CGTGACCGAG CGCCGGCGGG TCGAGTCCGC GCTGATCCGG
CAGGCCCTGC ACGACCCGCT CACCGACCTG GCCAATCGCG CCCTGCTGGG CGACCGGCTG
GATCAGGCGA TCGCCCGCCA GCAGCGCCAG CCCGAGCCGT TCGCCCTGCT GCTGCTGGAC
CTGGACGGAT TCAAACTGGT CAACGACAGC CTGGGTCATC AGGCCGGGGA CCAGGTGCTG
ATCACGGTGG CGACCCGGCT GCGCACGTCC CTGTGGGCCG AGGACACGGT CGCCCGGTTG
GGCGGCGACG AGTTCGCGGT CCTGCTGGAG CGCACCTGCG ACAGCCAGGC GCTGGCCATC
GCCGAACAGC TCCTGGGAGT GCTGCGGCGA CCGGTCCAGG TGCACGCCCA CACCATCACC
CCGGACGCGT CGGTGGGGGT GGCCCTGTCC ACCGGCGACG ACACCGCCGA GTCGATGCTG
CGCAACGCCG ACCTGGCCAT GTACGCGGCC AAGGACGCCG GCAAGGGGGT GGTGCAGGTC
TACCGCGCCT CGATGCACGA GAGCGTGCTG CAGCGGCTGA TCATGGACGC CGAGCTCCGG
CTGGCCATCG ACGAGCAGCA GTTCAGCGTG CACTACCAGC CGATCATCTC GCTGATCTCC
GGGCAGCTGC GCGGGTTCGA GGCGCTGCTG CGCTGGCAGC ACCCGGTCCG CGGCGATATC
CCGCCCAGCA GCTTCATCCC GCTGGCCGAG TCCTCCGGAC TGATCGTGCC GCTGGGCGGG
TGGGTGCTGC GGGAGGCCTG CAGCCAGGCG GCGCGGTGGC GGCGGCTGTT CCCCCCGACA
CGATCCCTGA CCATGTCGGT CAACCTGTCG GTGCGCCAGA TCCAGGAGCC CACTCTGGTG
GCGACCGTGC TCGAGGCCCT CACCGATGCC GGGCTCGAGC CCGGGGATCT ACAGCTGGAG
ATCACCGAGA GCACGCTGGA TCAGCGCAAC CTGATCCTGG GCGTGCTGCA CGAGTTGCAC
GACAAGGGGA TCAAGCTGGC CATCGACGAC TTCGGCACCG GGTACTCGTC ACTGAGCCGG
CTGCACACGC TGCCGGTGGA CCGGGTCAAG ATCGACCGGT CGTTCATCGA GTTGCTGGCC
GGTTCGAATC CGGCACCGCT GGTCGCCGCG ACCGTGGCCA TGGCGCACAG CCTGGGCATG
CAGACGACCG CCGAGGGCAT CGAGTCGGCC GACCAACTGC CCATGCTCCG GATGTACGGG
TGCGACGACG GGCAGGGCTA CTACTTGGGC CGGCCGATGT CCGCCGAGGC CGCGACCGCG
CTGATCCACA CCCAGCTCCG GCGGGAGAGC GCGGACTCGT GGCCGCCGGC CGCCCGTTGA
|
|---|
| Protein sequence | MGTEGQLHTV GGYGMRPVFR PDQRRCSAPS SGPVRVLVAL GLIGWVLVSA VSDPRLGRVA
VGLAATVAIV GGVIAGLRGG PARGWWWASG AIALWTVGDM IWWADSAADQ APGIVATVGL
FGYAGPVLVA AWVLDGAAER PMTFIRQVLD GLIVGGSVLF AAWVLLMHLA GGRTGSEQGR
WAALLTQTAL AAALATTLVM IGLTYAEGAR RPWLLAAGGL GLLALTSAVA LTNPATWPLA
AGSVAALLLL AAATWRDPGP QGRRPRAVLT PAQELIPNAA VVVILVAAVV GDIVRRPPLI
VATLVLLSMV AGRRLLISQE KHAHATTLDR DLTRSMAELD DVQSLLQRAF EDSLTGGLWT
SIDGRIHRAN PAYCRMLGRP ESDLVGTRLP TWVDPASAAR AEEMFTRVGT IDGAGLPVEL
RYRKPDGKPL WAQHTAAVFR TVEGAPIQMG VQVIDVTEAR MAARRQAHQA RFLDAILENI
GSAVVACDAQ GQVNLINLCT REMFNLPPAP WMPPPGIEQP PVYHADGITP IPPDERPLSR
SLRGELVRDV ETVFGEPGAD RRIVLSSAHR LQDEDGAVLG AVLVMHDVTE RRRVESALIR
QALHDPLTDL ANRALLGDRL DQAIARQQRQ PEPFALLLLD LDGFKLVNDS LGHQAGDQVL
ITVATRLRTS LWAEDTVARL GGDEFAVLLE RTCDSQALAI AEQLLGVLRR PVQVHAHTIT
PDASVGVALS TGDDTAESML RNADLAMYAA KDAGKGVVQV YRASMHESVL QRLIMDAELR
LAIDEQQFSV HYQPIISLIS GQLRGFEALL RWQHPVRGDI PPSSFIPLAE SSGLIVPLGG
WVLREACSQA ARWRRLFPPT RSLTMSVNLS VRQIQEPTLV ATVLEALTDA GLEPGDLQLE
ITESTLDQRN LILGVLHELH DKGIKLAIDD FGTGYSSLSR LHTLPVDRVK IDRSFIELLA
GSNPAPLVAA TVAMAHSLGM QTTAEGIESA DQLPMLRMYG CDDGQGYYLG RPMSAEAATA
LIHTQLRRES ADSWPPAAR
|
|---|
| |