Gene Namu_4828 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNamu_4828 
Symbol 
ID8450458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNakamurella multipartita DSM 44233 
KingdomBacteria 
Replicon accessionNC_013235 
Strand
Start bp5384627 
End bp5386357 
Gene Length1731 bp 
Protein Length576 aa 
Translation table11 
GC content75% 
IMG OID645043867 
ProductMur ligase middle domain protein 
Protein accessionYP_003204092 
Protein GI258654936 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0769] UDP-N-acetylmuramyl tripeptide synthase 
TIGRFAM ID[TIGR02068] cyanophycin synthetase 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCAGA CAGGTGCTGA CCGGGAGCCC GACCCGTCCG GCCCGATCGA ATTGCGGGTC 
CTCACCGGTC CCAACCTGTA CTTCCCGCGG CCCGCGGTCA AGCTGACCCT GGACGCCTCC
GGCGTGCTGG CGGCCGATCC GGCCCGGGTG GTCGCCTGGC AACGGGCGTT GCGCGTGCGC
GAACCGACCG TCGGCCTGCC CCGCTCCCCG GCCCGGGCGG TGGCCGCGGC CGAGCTGGCC
GCGGCCGTGG TCCGCCGGGC CGCCGGCCGG CTGCGCACCC GGGTCGCCGC GGTCGGCCGC
CCCGGCGACG ACGACACCGT GGTGGTGGCG TACCCCTTCC GGCATCGGCG CACGGCCGAG
CTGTTCGGGG CCGCGGTCGC CGAGGTCTTC GCCGCCGTCA CCCTGCGGGA CGAGGACCCG
GGCCACGCGC TGGACCAGGT CCGGCCGGCC CTGGCCGGGC ACGACCCGGG CGAGACGATC
GCACCGCTGC GCCCGTCGAT CCCGGTCGTC GCCGTCACCG GCACCAACGG CAAGACCACC
ACCACCCGGC TGATCGCCCA CCTGGTGAAG GCCGGCGGCC GCATCCCGGG CTGGTCCTCC
ACCGACGGCA TCGTCATCGA CGGGGTCGAG GTGGAAAGCG GCGACTGGTC CGGACCGGGC
GGCGCCGCCC GGGTGCTGGC CGATCCGAGC GTGCAGGTCG CGGTGACCGA GACCGCGCGC
GGCGGCATCC TGCTGCGCGG CGTGGGCACC TCGGTCAACG ACGTCTCGGT GGTCACCAAC
ATCAGCGCCG ACCACCTGGG CCTGCTCGGC GTGCACACCC TGGACCAGCT GGCCGAGGTC
AAGTCGGTGA TCGTGCGGAT CACCAAGCCC AGCGGCTGGA CCGTGCTCAA CGCCGACGAC
CCGCTGGTCC GGGCGATGCG CTCGGTCTCC CGGGCCAAGC CGTGGTTCTT CTCCCCCGAT
CGGGACAACC CGTACCTGGA CGACGCCCTG GAGGCCGGCG GCCGGGCCAT CACGGTCATC
GACGGGCAGA TCGTGATCCT GGGCCGCGGC CACGACCCGA CCGACGTGAT CGCCCTGGCC
GACGTGCCGT TGACGATGGC CGGGGCGTCC CGGGTGAACA CCGCGAACGC GCTGGCCGCC
ACCGCCGCGG CGATCGCCAT CGGGGTGCCG CTGCCGGCCG TCCGCGAGGG CCTGCGCACG
TTCACCACCG GCGCCGCGCA CAACGCGGGC CGGCTCAACG TCTACCGCCT GGGTGGCCGG
GCGGTGGTGC TCGACCTGGC CCACAACGAG GCCTCGCTGG AGTCGCTGCT GGCCGTGGCC
CGGGCGTTGA CCCTGCCCGG CGGCGAGCTG GCGGTGGTGC TGGGCACCGC CGGGGACCGG
CCGGACGAGG CCATCCACGC AATGGGGGCG ATCGCCGGGC GATCGGCCGA CCGGCTGCTG
GTCGCCGGCC GGACCAAGTA CACCCGCGGT CGTCAAGCGG GCGAGATGGA AGCGATCTGG
CGGGCCGGCG CGGCCGAGGC GGGTGTGGTC GACGTGACCG AGTCGGCCGA CGAACTGAGC
GGCCTGGTCG CCGCGCTCGA TGCGGCGGTG CCGTTGCCCG ACGGCTCGGT GGTGGCGGTG
TGCGCGCTGG AGCAGCGGGC GGAGCTGGTC GCCGAGATCG AGCGCCGCGG CGGCGGGGAG
ATGTCACCCG ATGAGGTGGC CGAGCGCGTC CGGGCGGCGG CCGCCGGATA A
 
Protein sequence
MAQTGADREP DPSGPIELRV LTGPNLYFPR PAVKLTLDAS GVLAADPARV VAWQRALRVR 
EPTVGLPRSP ARAVAAAELA AAVVRRAAGR LRTRVAAVGR PGDDDTVVVA YPFRHRRTAE
LFGAAVAEVF AAVTLRDEDP GHALDQVRPA LAGHDPGETI APLRPSIPVV AVTGTNGKTT
TTRLIAHLVK AGGRIPGWSS TDGIVIDGVE VESGDWSGPG GAARVLADPS VQVAVTETAR
GGILLRGVGT SVNDVSVVTN ISADHLGLLG VHTLDQLAEV KSVIVRITKP SGWTVLNADD
PLVRAMRSVS RAKPWFFSPD RDNPYLDDAL EAGGRAITVI DGQIVILGRG HDPTDVIALA
DVPLTMAGAS RVNTANALAA TAAAIAIGVP LPAVREGLRT FTTGAAHNAG RLNVYRLGGR
AVVLDLAHNE ASLESLLAVA RALTLPGGEL AVVLGTAGDR PDEAIHAMGA IAGRSADRLL
VAGRTKYTRG RQAGEMEAIW RAGAAEAGVV DVTESADELS GLVAALDAAV PLPDGSVVAV
CALEQRAELV AEIERRGGGE MSPDEVAERV RAAAAG