| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_4220 |
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| Symbol | |
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| ID | 8449846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nakamurella multipartita DSM 44233 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013235 |
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| Strand | + |
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| Start bp | 4665588 |
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| End bp | 4672580 |
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| Gene Length | 6993 bp |
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| Protein Length | 2330 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 645043269 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003203498 |
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| Protein GI | 258654342 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.184212 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGGAGC AGGAAGCTGA CGAGTACGTG GTCAGCGACC CCGAACTGAT CACCCAGGTC
CGCAACGGCG ATCGCGAGGC CTTCGGCGAG CTGTACCGGC GGCACTCGGG ACCGGCCACC
AACTTGGCGC GCCAGTTCGC CCGCAACGCC GCCGAGGCCG ACGACCTGGT CTCCGAATCC
TTCGCCCGCG TGCTGGACAA CCTGCTGGAC GGCAAGGGCC CCGACACCGC ATTCCGCGCC
TACCTGTTCA CCACCATCCG CAACACCGCC TACGACCGCA CCCGCAAGGA CAAGCGGCTG
CAGTTCACCG ACGACATGAC CGCCCATGAC GTGGCCGTGC CCGGTGACGA TCCGGCGCTG
ATGAAGATGG AGAGCGGGCT GGTCGCCAGC GCGTTCGCTC AGCTGCCGGA ACGCTGGCAG
GCCGTGCTGT GGCACACCCA GGTCGAGGGC GAATCGCCCG CCCAGGTCGG AGCGCTGCTC
GGGATGGCCC CGGGGGCGGT GTCCTCGCTC GCCTTCCGGG CCCGGGAGGG CCTGCGCGAG
GCCTATCTCC AGGCCCATCT GGCCGAGACC GCGGCCGAGC AGTGCCGCTC GACGGTGGAA
CGGCTCGGCG CCTGGACCCG CGGCGGCCTG TCCAAGCGGG AGACCCAGCA GGTCGACGCG
CACCTCAAGA CGTGCGACCG CTGTCGCGCG CTGGCCGCGG AGCTGCAGGA GGTCAACCAC
AACCTGCGCG GCCTGCTCGC CCCGCTGTTG CTCGGCGGCG CGGCGGCCGC GGGCTACCTG
GCGACCCTCG GACCGGTGGC ACCGCTGGCG GTGCCGGGGG CGCTGGCCGG TGGCGCGACC
GGCGGCTCGG CGGGCTCGGC GGGCAGCGGC GGTGGCGCGG GAGCCGCCGG GGCCGGTGCG
GCCGGCGGCG CCGGAGCGGC CGGAGGGGCC AGTGCGGCCG GGATCGCAGC GGCGGCCGCC
GCTGCGGCGG CGGGTGCTGC CGCCCTGGGA CTTGGCGCAT TGGCCAGCGC CGCCGATTCG
AACGCGGCGG CCGCGTCCTC CACCGGTGGT GCAGGGGCTG GTGGTGCTGG TGCCGGCGCT
GGCGGAGCAG GGGCCGGCGC GGCGGGCGCG GGGGCCGCAG GCGCCGGTGC AGCGGCGGGC
GCCGGCGGTG CGGCCACCGG ACTGGTCGCG ACCATCGGGG TCGGTGGGCT GATCGCGGCC
GGCGCGGTGG TGGCCGCCGC CGTCCTCGCG GCGGTCGTGC TGATCGTGAA CGGCTTGACT
CCGGCGACCA CCACACCCGT GGCCGATCAA CCGCCGTCTG TGGCCGCCCC GGCCACCTCC
GGCGGCGCCG ACGGCGCCGC CGGCCCGACC GGGTCGGACT CCGCCGGCGG CACCGGTAGC
CCGGCGGGTT CGGTCGCACA GGGCGGCGAC ACCACCGCCG GCGGGGCCAA TGGCTCGTCG
GCCGGCGCGT CCGACGCCGG TTCCGGCAGC AACCCGGGCG CCGGGACCGA CTCGGGCGCG
GGCGGAGATC AGGGTGGGGC CGGCACGGGC ACCGGCGGAA ATCAGGGTGG GGGTGGCGAT
CAGGGCACCG GCGGGTCCTC ACCGCTGTCC ACCTCGGCAG TGACCAACCC GGCAGAGACC
AACCCGGCAG GGACCAACCC GGCACCGACC ACGCAGGTGC CGACCACGGC CGAGCCGACG
TCCCCGGGGC CGACCTCGGC GACCACCGAA CCGACGACCA CCGAACCCAC CACCTCCGAA
CCCACAACCC CAGTGCCCCC CACCGACCCG AACCTGACCG TCTCGGGTCC TGCCGGTGTG
TCGATCACCG CCGGTGCATC GGCCGGTATC GACCTCACGG TCCTGAACAA CGAGGGCACC
AGCGTCTCCC CGACCCTCAC CGTGCAGCTC CCGTCCGGCG TGAGCGTCAC CGGCTTCAGC
CAGACCCCGA CTGCTCCCGG ATTGCGCGGC GCTCGCGCCG GGTTGCTGCG CGCCGGGACG
TGCGAGCCGC TCGCCTCCGG CTGCCGCGCC CAGCTCGACC CGATCGGACC CGGGGAATCG
ACCGCGGTCA CCATCACGCT GAGCGCCGAC CGGGCATCCA CCGGCGGCGA GGTGACCATC
ACCGGCTGGT CCGGCCCGTC GATCACCGTG CCGGTCACCG TGACGTCCGC GGTGAAGCTG
GTCGGGAGCG CCGACGGCCC ATTAACCGCC GACGGCGGTA TCCACACGGT CAGGGTGACC
GAGGAGAGCA ACGGCTCCCC GGAGCCGGTC ACCTTCAGCA GCAGCCAGCT GCGCTTCGCC
GGCACACCCA CCTGTTCGGT GACCGCGGAG CGGGCCGATT CGGTGATCTG CACGCCGGGC
GCGAACGGCA CCTTCGACCT GGCCGTGCTG ATCGACCGTG ATCAGCCGGA GGGCGAACTC
GGTTCGGTGC TGCAGGTGAC CGATGCCCAC CAACGGCCGG TCGAGCTGAC CGCCGCCGAG
GGGACGTCGC TCACGATCGT CAAGCCGGCG CCGGCCGACC TGCAGCTCAA TCCGCAGGTC
CGCGTCGACC CACCTGTGTC CGGCGGCTCC GGCCGCGTCT CGTTCACGGT GCACAACGAG
GGCGGCACCG CGTCGGCGGA CGGCACCACG CTCGACCTCG CGTTCACCGG CGGCCTGGTG
CTGACCACCA GTGCCCCCGA GGGCGTGACC TGCACGGCCA CCGGCTGCAC GCTGCCGTCG
ATCGAACCGG GAGCCGACCT GGAGATCACC CTGTCGATCT CGGCCGCCCC CACCGCGACC
GGTGGCGAGG TCCTGGTCCG GTGGGCCGGC CAGGAGGGCG GTCTGAGCAT CGGTGTGCCG
GTCGGTCCCG CCATCACGGC CCTAGTCGCG CAGAAGGTCG ACCTGGTCGC CGACGGCACC
AGCCAACCGG TAGTTCTGCG GGCCGACCTG GCGCAGCCCG GCATCGATCC CGGGCCCATC
ACAGTGAGCA CCGGCACCGA CCTGGTCTCG GTCAGCTGCG GCGAGCCGGA CGCGACCGCG
GCCAGGACGG CGGCCTGCTC GCTCAGCTCG GACGGCGCCG TGACGATCCA GGTGACGGTG
CCCACGGGCG TCGTCGCTGG TCCCTTCGCC CTGACCGCGA CCGACGCGGC CGGCCGGCGG
ATCGACCCGG TCGACGTCAG CGCCGTCCGG ATTGTCCGGC CGGCCGCGTT GGTGCTGGGC
GAGGCCGGCG TGATCCAGCC GCCGTTCGCC GGCGGGTCGG GCGCGTTCTC GGTCACGGTC
ACGAACGCCG GCGACCTCGC CTCGGCCGCC GGCCAGGCCA TCGAGGTCGA CCTGCCGGAC
GGGCTGACGC TGACCGGGAC CACCGTCGTC GGTGGCCAAT GCGCCGGTCA GCCGCCGGCC
GCCCTGGCGA TCGCGGCCCC GTCGGTGCTG GTCACCGCCG ACTGCCGGTT GCCGGCCATC
GACCCCGGGC AGTCGGTCAC GCTCGCGGTC ACGGTCCACG CCGACCCGGC GTCGACCGGC
GACACCAGCA CCGTCAGCCT GCCCGGCCAG GGACCGGGCG TCCCGGTGGA CCTCACCGTG
CAGTCCGGCA TCGCCACGCT GACGGTCGAG GCGACGACGC CCCTGGTCGC CGACGGAGCC
ACCTACCCGC TGACCATCTC GGCCGCTCCC GCCGACCCCT CGGTCACCGA TCTCGGATCG
ATCACCGTGG ACACCGGATC CGATGAGCTC ACCATGGCCT GTGGCGGACC GGCGGCCCGG
CAGGTCACCT GTGCGTTCAC CGGCCCCACG CTGCCGGTCA CCCTGACGGT CGCCCGGACC
GCTGCGCCCG GACCGCTGAC GCTGACCGCC GTCGACCTGG CGCAGCGACC GATCCGGACC
GACGTCGGCT CGCTGGCGAT CAAGACCCCG GCCGCCCTGA GCCTGTCGCC GCTGACCGTG
ACGTCGCCGT TGGTGGCCGG CGGCACGGGC GCCGTCACCG TCACCGTCAG CAACACCGGT
GACGTCGACG GGACGATCGG GCCGGTCACC CTGGTGGCCC CCGAGGGCCT CGCGATCGCC
GGCGTCACCC CGCAGGACTG CGCGCGCTCG TGCACCGTGC CGGCCCAGGG CTCGACCACC
GTCGACGTCG CGCTGACCGT TGACGCCTCG CTGCCCGCGT CGGTCCCGCT GCAACTGGAC
CTCGGCCCGC TGACCACCCC GGCCGGTTCC GTCGACGTGG CCGCCGGGAT CGAGCAGGTC
GAGATCTCCT CCGCCGGCCA ACCGGCGGAC CCGCTGATCG CCGACGGCCA GGAGGCCACC
CGCAGCGTCG CCGTGATCAG TTCGCTGACC ACCCCGGGGC CGGTCACCCT GACCGCGCCG
AAGGGCGTCA CGCTGGCCGC CTGCGGGAAG GCGGGCGCCT CCGTCACCTG CCTCGCACCC
TTCGACCTGG GCATCACGGT GCCCATCGGA TACGCGCCGG GCTCATTGGC CCTGTCCGCC
GTCGACGCCG GACAGCGCCC CCTGAAGGTC ACCGAACTGA CGGTGGCTGC CCCGGCCGCC
CTGACCCTGG ACGTCCCGGA GAGCGCCACC GCGCTCGCCG GTGGCCCCGG CACCCTCACC
GTCACGGTGA CCAACCGGGG CGGCAGCCCA TCGGCCGGCC AGGAATCCCT GACCGCGGAC
CTGCCCGAAG GCTTCACCCT GACCGGCTCC ACGTGCGACG AGCCGGCCGC AGCGGCGCTG
GCGGTCGCCG TACCCACCGC GGCGGCCGAC CCGTGTGCGC TTCCGGTACT CGCGGTGGAC
GAGAAGGTGG CCGTCACCTT CTCCTTCACC GCCCCGCCCC AGGCCGGGCC GACGCAGAGC
ATCGACGTGC GGCTGGACGG TCAGGAACCG GTCACCGTTC CGCTGACCGT GGGCGCCGGC
ATCACCCGGC TGGCCGCCGA TCCGGATCTC GCCCTGCCGG CCAACGACAC CGCCCAGCCG
GTCACGTTGG TCGCGACGCC CGCCGCCGAC GGCCTGATCC TGGGCTCGGT CACGCTGAGC
TCGGCTGAGA AGGACGTGCA GGTGACCTGC GCGAGCGACT GCCGGGTCGG ACCTGACCGG
ACGGTCGCCG TCATCATCAC GGTGGCCTCG ACGCACGCCT CGGAGCCGCT GCGTCTGCTC
GCCCAGGACG CCGGCGGTCG GCCGATCGAG GTCGATCCGA TCGCTGTGCT CGGCGCCCCA
CAGGTGAGCC TGACCGGTCC GACGGTGGTC CGGTCGCCGA TCGCCGGCGG CCAGGGTCAG
TTCAGCCTGA CCGTCACCAA CCGGGGCGAG TCCCCGTTGC CCGCCGGTCA GCCGATCGGG
ATCACCGCGC CCGGCTTCAC CGTCGTCTCG GTGGAGGGCG CCGGGGTCGG CCAGTGCGAC
AAGACCGGCT GCCGATTGCC GCAGCTTGAC GCGGCATCGT CCATCACCAT CACCATCACC
CTCGCGGCCC CGGCGGACAC CAAGCCCGGC ACCTACCAGC TCACGGCCGA TCTGCTCGAC
CGCTCCTACC CGGTCGACTT CACCGTCGGT CAGGCCATCA CCGGACTGGT CGCCACCCCG
GGCGGCCCGC TGACCGCCGG CACCACGACC ACACTCTCGA TCGCCGCCAC CCTGGCCGGC
GAGCCGACCG ACCCGATCGC AGTCACCCTG ACCTCGACCA GCCCGCTGGT CACGCTCAGC
GGGTGCAAGG GCAACGGGTC GAGCATGACG TGCACCGGCC AGTCGTTCAC CGTGGCGGTG
ACGATCGACG CGAAGCAGCC GGCCGGGCCC CTCCCGGTGA CCGCGACCGA CGCCGCCGGC
AACGCGGTGG CGCTCACCGA CGGGGCCGCG CCGCTGCAGG TCGTGGCCCC GGCGACCACG
CTGGCGCTGT CCGAGCTGAC GATCATCCGC GACGGCAGCG CGATCACCAC GCTCAGCCTT
CGCGTCACCA ATCCCACCAC GGCGACGATC CCGGCGCGGT CGATCGCCCT GACCTACCCG
AGCCCGCCGG TGGTGGGCCA CCTGGTCGAG ATCGTCGGTC CCGGCCGGAT CCCGGTCTAC
TGCGTGACGT CCTGCGCGGT GCCCTCGCTC AAGGCCGGGC AACACAGCGA CCTGACGATC
TACTTGCTGC TCCCCCGCCC CACCACCGAC CCGGTCACCG TCTCGGTCAC GATCGACGGC
ATCACCCGGA CGGCCACGGT GATCGACCAG GTCGACGGCC TGACCCGCAC CGATCAGCCG
GCCGGCCCCG CCACGCCCGA CGCGGCCACG GACGGCGCCG CGCCCTCGAC CGATCCGACC
CCGACCCCGA GCTCTGAGCC GACCCCGGTA CCGGCCGAGT CCACCGGGCC GGCCGAATCC
ACGAGTGCCG CCCCCGCCAC CGACGGGCCC TCCACCGACG GGCCCTCCAC CGACGGGCCT
TCCACCGACC GACCGACTCG CTCCTCCACC GAGACCGGTG CGACCGACGG CCCCACCGGT
GAGCGCCCGA CCACCGCCAG CCCCACCACT GCGAGCTCCA CCAGCGAAAG CCCGACCACC
GCGAGCACCA CCGCGGAGTC GCCGGCGGAC ACCGGTACGA GCACGCCCGA GCCGGCGCCG
GCGCACCTCT CGCTCGGAAC GCCCGCCGTC CTGGACCCGC TCACCGCAGG CGGGAGCGGG
CGGCTGACCC TGACCGTGCG CAACACCGGT GACGGGCCCT CGACCGAGCA GGCGGTCCGG
ATGAGCCTGC CCGACGGGGT GAACGCGACG GCGGTCACGG TGGACGGCGC CCCGGCCGGC
GGCGGGCTGC GGTGCACCGT CCCCGCGCTC GAGCCCGGAG CCGCGGTGAC CGTCGTGATC
ACCCTCGCCG TCGACGCTGA TGCGCAGACC GGGCCGGCTC GCTTCGACGT GGACGACGAC
TCCGCGACCG TCGAGCTGAC CGTCGAGCGC CCCACCCCGC CCCCGAATCC CGAACCGGCG
CCCACCGCAT CGTCCAACCC GGCGGTCCGC CCGGACGATG CGGCGACGGA CCCGGCGTCC
GCGACGACCA GCCCGCTCCC GACCGGCCCG TGA
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| Protein sequence | MPEQEADEYV VSDPELITQV RNGDREAFGE LYRRHSGPAT NLARQFARNA AEADDLVSES
FARVLDNLLD GKGPDTAFRA YLFTTIRNTA YDRTRKDKRL QFTDDMTAHD VAVPGDDPAL
MKMESGLVAS AFAQLPERWQ AVLWHTQVEG ESPAQVGALL GMAPGAVSSL AFRAREGLRE
AYLQAHLAET AAEQCRSTVE RLGAWTRGGL SKRETQQVDA HLKTCDRCRA LAAELQEVNH
NLRGLLAPLL LGGAAAAGYL ATLGPVAPLA VPGALAGGAT GGSAGSAGSG GGAGAAGAGA
AGGAGAAGGA SAAGIAAAAA AAAAGAAALG LGALASAADS NAAAASSTGG AGAGGAGAGA
GGAGAGAAGA GAAGAGAAAG AGGAATGLVA TIGVGGLIAA GAVVAAAVLA AVVLIVNGLT
PATTTPVADQ PPSVAAPATS GGADGAAGPT GSDSAGGTGS PAGSVAQGGD TTAGGANGSS
AGASDAGSGS NPGAGTDSGA GGDQGGAGTG TGGNQGGGGD QGTGGSSPLS TSAVTNPAET
NPAGTNPAPT TQVPTTAEPT SPGPTSATTE PTTTEPTTSE PTTPVPPTDP NLTVSGPAGV
SITAGASAGI DLTVLNNEGT SVSPTLTVQL PSGVSVTGFS QTPTAPGLRG ARAGLLRAGT
CEPLASGCRA QLDPIGPGES TAVTITLSAD RASTGGEVTI TGWSGPSITV PVTVTSAVKL
VGSADGPLTA DGGIHTVRVT EESNGSPEPV TFSSSQLRFA GTPTCSVTAE RADSVICTPG
ANGTFDLAVL IDRDQPEGEL GSVLQVTDAH QRPVELTAAE GTSLTIVKPA PADLQLNPQV
RVDPPVSGGS GRVSFTVHNE GGTASADGTT LDLAFTGGLV LTTSAPEGVT CTATGCTLPS
IEPGADLEIT LSISAAPTAT GGEVLVRWAG QEGGLSIGVP VGPAITALVA QKVDLVADGT
SQPVVLRADL AQPGIDPGPI TVSTGTDLVS VSCGEPDATA ARTAACSLSS DGAVTIQVTV
PTGVVAGPFA LTATDAAGRR IDPVDVSAVR IVRPAALVLG EAGVIQPPFA GGSGAFSVTV
TNAGDLASAA GQAIEVDLPD GLTLTGTTVV GGQCAGQPPA ALAIAAPSVL VTADCRLPAI
DPGQSVTLAV TVHADPASTG DTSTVSLPGQ GPGVPVDLTV QSGIATLTVE ATTPLVADGA
TYPLTISAAP ADPSVTDLGS ITVDTGSDEL TMACGGPAAR QVTCAFTGPT LPVTLTVART
AAPGPLTLTA VDLAQRPIRT DVGSLAIKTP AALSLSPLTV TSPLVAGGTG AVTVTVSNTG
DVDGTIGPVT LVAPEGLAIA GVTPQDCARS CTVPAQGSTT VDVALTVDAS LPASVPLQLD
LGPLTTPAGS VDVAAGIEQV EISSAGQPAD PLIADGQEAT RSVAVISSLT TPGPVTLTAP
KGVTLAACGK AGASVTCLAP FDLGITVPIG YAPGSLALSA VDAGQRPLKV TELTVAAPAA
LTLDVPESAT ALAGGPGTLT VTVTNRGGSP SAGQESLTAD LPEGFTLTGS TCDEPAAAAL
AVAVPTAAAD PCALPVLAVD EKVAVTFSFT APPQAGPTQS IDVRLDGQEP VTVPLTVGAG
ITRLAADPDL ALPANDTAQP VTLVATPAAD GLILGSVTLS SAEKDVQVTC ASDCRVGPDR
TVAVIITVAS THASEPLRLL AQDAGGRPIE VDPIAVLGAP QVSLTGPTVV RSPIAGGQGQ
FSLTVTNRGE SPLPAGQPIG ITAPGFTVVS VEGAGVGQCD KTGCRLPQLD AASSITITIT
LAAPADTKPG TYQLTADLLD RSYPVDFTVG QAITGLVATP GGPLTAGTTT TLSIAATLAG
EPTDPIAVTL TSTSPLVTLS GCKGNGSSMT CTGQSFTVAV TIDAKQPAGP LPVTATDAAG
NAVALTDGAA PLQVVAPATT LALSELTIIR DGSAITTLSL RVTNPTTATI PARSIALTYP
SPPVVGHLVE IVGPGRIPVY CVTSCAVPSL KAGQHSDLTI YLLLPRPTTD PVTVSVTIDG
ITRTATVIDQ VDGLTRTDQP AGPATPDAAT DGAAPSTDPT PTPSSEPTPV PAESTGPAES
TSAAPATDGP STDGPSTDGP STDRPTRSST ETGATDGPTG ERPTTASPTT ASSTSESPTT
ASTTAESPAD TGTSTPEPAP AHLSLGTPAV LDPLTAGGSG RLTLTVRNTG DGPSTEQAVR
MSLPDGVNAT AVTVDGAPAG GGLRCTVPAL EPGAAVTVVI TLAVDADAQT GPARFDVDDD
SATVELTVER PTPPPNPEPA PTASSNPAVR PDDAATDPAS ATTSPLPTGP
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